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Report for CCDS24047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24047.1 Public Mus musculus 10 Atcay 23 108 98 CCDS HistoryNCBI Gene:16467Re-query CCDS DB by CCDS ID:24047.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047408.5 ENSMUSP00000036721.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047408.5Link to Ensembl Protein Viewer:ENSMUSP00000036721.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047408Re-query CCDS DB by Protein ID:ENSMUSP00000036721
Original member NCBI NM_178662.4 NP_848777.1 Updated not alive Link to Nucleotide Sequence:NM_178662.4Link to Protein Sequence:NP_848777.1Re-query CCDS DB by Nucleotide ID:NM_178662Re-query CCDS DB by Protein ID:NP_848777
Current member NCBI NM_178662.5 NP_848777.1 Accepted alive Link to Nucleotide Sequence:NM_178662.5Link to Protein Sequence:NP_848777.1Re-query CCDS DB by Nucleotide ID:NM_178662Re-query CCDS DB by Protein ID:NP_848777Link to BLAST:NP_848777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848777.1 372 Q8BHE3 372 100% 0 0

Chromosomal Locations for CCDS 24047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81206732 81206741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81207514 81207546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81207834 81207908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81210053 81210088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81210524 81210622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81211846 81211932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81212472 81212603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81212849 81212951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81213223 81213408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81214722 81214943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81219155 81219213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81224424 81224500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGGAACCACAGAAGCTACACTAAGGATGGAAAATGTGGACGTGAGGGATGAATGGCAGGATGAGGATC
TGCCCAGACCGCTCCCAGAAGACACCGGGGTGGAGCGGCTGGGTGGCGCAGTGGAAGACTCCTCCTCACC
TCCCTCCACCCTGAACTTGAGCGGAGCACATCGAAAGAGAAAGACGCTGGTGGCTCCAGAGATCAACATC
TCCCTGGACCAAAGCGAGGGCTCTCTGCTGTCCGACGACTTCCTCGACACACCTGATGACCTGGACATCA
ATGTGGACGACATTGAGACGCCAGATGAAACTGACTCTCTGGAGTTCTTGGGAAATGGCAATGAACTTGA
GTGGGAAGATGACACCCCAGTGGCCACCGCCAAAAACATGCCTGGTGACAGTGCGGACCTGTTTGGGGAC
GGCTCTGCGGAAGACGGCAGTGCGGCCAACGGTCGTCTGTGGCGAACTGTCATCATAGGGGAGCAAGAGC
ATCGCATCGACCTGCATATGATCCGGCCCTACATGAAGGTGGTCACCCATGGAGGATACTACGGGGAAGG
TCTCAACGCCATCATCGTGTTTGCAGCCTGCTTCCTGCCAGATAGCAGCTCCCCAGACTATCACTACATC
ATGGAGAATCTCTTCCTGTACGTCATCAGCAGCCTAGAACTGCTCGTGGCTGAGGACTACATGATCGTGT
ATCTGAACGGCGCCACGCCCCGGAGGAGGATGCCTGGCATTGGTTGGCTGAAGAAGTGTTACCACATGAT
TGACAGGAGACTGAGGAAGAATCTAAAGTCCCTGATCATCGTCCACCCCTCCTGGTTCATTCGCACTGTG
TTGGCCATCTCCCGGCCATTCATCAGTGTCAAGTTCATCAGTAAAATTCAGTACGTGCACAGCCTGGAAG
AGCTGGAGCGACTGATTCCCATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAG
ACTCCGAGCCAAGAGGGAGAGCACACGGCCACCGCAGCCGGAGTTCCTCCTTCCCAGGTCAGAAGAAAAG
CCAGAGACTGTGGAAGAAGAGGACAGGGCAGCAGAGGCAACAGAGGACCAGGAAACTAGCATGTCCTGA

Translation (372 aa):
MGTTEATLRMENVDVRDEWQDEDLPRPLPEDTGVERLGGAVEDSSSPPSTLNLSGAHRKRKTLVAPEINI
SLDQSEGSLLSDDFLDTPDDLDINVDDIETPDETDSLEFLGNGNELEWEDDTPVATAKNMPGDSADLFGD
GSAEDGSAANGRLWRTVIIGEQEHRIDLHMIRPYMKVVTHGGYYGEGLNAIIVFAACFLPDSSSPDYHYI
MENLFLYVISSLELLVAEDYMIVYLNGATPRRRMPGIGWLKKCYHMIDRRLRKNLKSLIIVHPSWFIRTV
LAISRPFISVKFISKIQYVHSLEELERLIPMEHVQLPDCVLQYEEQRLRAKRESTRPPQPEFLLPRSEEK
PETVEEEDRAAEATEDQETSMS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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