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Report for CCDS26835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26835.1 Public Mus musculus 14 Thrb 23 108 98 CCDS HistoryNCBI Gene:21834Re-query CCDS DB by CCDS ID:26835.1Re-query CCDS DB by GeneID:21834See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26835.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022304.9 ENSMUSP00000022304.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022304.9Link to Ensembl Protein Viewer:ENSMUSP00000022304.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022304Re-query CCDS DB by Protein ID:ENSMUSP00000022304
Original member Current member NCBI NM_009380.3 NP_033406.1 Accepted alive Link to Nucleotide Sequence:NM_009380.3Link to Protein Sequence:NP_033406.1Re-query CCDS DB by Nucleotide ID:NM_009380Re-query CCDS DB by Protein ID:NP_033406Link to BLAST:NP_033406.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033406.1 475 P37242-2 475 100% 0 0

Chromosomal Locations for CCDS 26835.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 17981877 17982201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18002528 18002628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18008569 18008716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18011065 18011270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18026637 18026783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18030143 18030401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18033425 18033666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGAACTACTGTATGCCAGAGGTACACGAAGTGTGCCCAGCTGCCAGCAGCAACTGCTACATGCAGGTCA
CTGACTACCTCGCATATCTGGAAGACAGTCCGGCTCTCAGTGGTCGTGATGTCCAAGCTGTGCCCAGTAG
CAGCATATATATGGAACAGGCCTGGGCAGTGAATCAGCCTTATACCTGTAGTTACCCTGGAAACCTGTTT
AAAAGCAAGGACTCTGACTTGGACATGGCCCTCAGTCAGTCCAGCCAGCCTGCACATCTCCCTGAAGAAA
AGCCTTTTCCTCAAGTGCAGTCGCCACCGCACTCACAAAAAAAAGGGTATATCCCCAGCTATTTAGACAA
AGATGAGCTCTGTGTAGTGTGTGGGGACAAAGCCACAGGGTACCACTATCGCTGCATCACCTGTGAAGGC
TGCAAGGGCTTCTTTAGAAGAACCATTCAGAAAAGTCTCCATCCATCTTATTCCTGTAAATATGAAGGAA
AGTGCATCATAGACAAAGTCACCCGCAACCAGTGCCAGGAATGTCGCTTTAAGAAATGCATCTATGTTGG
CATGGCAACAGACTTGGTGCTGGATGACAGCAAGAGGCTAGCCAAGCGGAAGCTTATAGAGGAGAACCGT
GAGAAGAGGCGGCGGGAAGAGCTACAGAAATCAATTGGGCACAAGCCAGAACCCACGGATGAGGAGTGGG
AGCTCATCAAGACAGTCACTGAGGCCCACGTGGCCACCAATGCCCAGGGCAGCCACTGGAAGCAGAAGCG
GAAATTCCTGCCAGAAGACATTGGACAAGCACCCATCGTGAATGCCCCAGAAGGTGGCAAGGTTGACCTG
GAAGCCTTCAGTCATTTTACAAAAATCATCACACCAGCAATTACCAGAGTGGTGGATTTTGCCAAAAAGT
TGCCCATGTTTTGTGAGCTGCCATGTGAAGACCAGATCATCCTCCTCAAAGGCTGCTGCATGGAGATCAT
GTCCCTTCGAGCTGCTGTGCGCTATGACCCAGACAGCGAGACTCTAACTTTGAATGGGGAAATGGCAGTG
ACACGAGGCCAGCTGAAAAATGGGGGCCTTGGGGTGGTTTCAGATGCCATCTTTGACCTGGGCATGTCTC
TGTCATCTTTCAACCTGGATGACACTGAAGTCGCCCTGCTTCAGGCCGTCCTGCTAATGTCTTCAGATCG
CCCAGGGCTAGCCTGTGTTGAGAGAATAGAGAAATACCAAGACAGTTTCCTGTTGGCCTTTGAACACTAT
ATCAATTACCGGAAGCACCATGTGACACACTTTTGGCCCAAACTCCTGATGAAGGTGACAGACCTGCGGA
TGATTGGAGCTTGCCATGCCAGCCGCTTCCTCCACATGAAGGTGGAGTGCCCCACTGAGCTCTTCCCGCC
TCTGTTCTTAGAAGTATTTGAGGACTAA

Translation (475 aa):
MNYCMPEVHEVCPAASSNCYMQVTDYLAYLEDSPALSGRDVQAVPSSSIYMEQAWAVNQPYTCSYPGNLF
KSKDSDLDMALSQSSQPAHLPEEKPFPQVQSPPHSQKKGYIPSYLDKDELCVVCGDKATGYHYRCITCEG
CKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENR
EKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDL
EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPDSETLTLNGEMAV
TRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHY
INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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