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Report for CCDS75949.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75949.2 Public Homo sapiens X ARSL 24 110 108 CCDS HistoryNCBI Gene:415Re-query CCDS DB by CCDS ID:75949.2Re-query CCDS DB by GeneID:415See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 75949.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 75949.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000672761.1 ENSP00000500108.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672761.1Link to Ensembl Protein Viewer:ENSP00000500108.1Re-query CCDS DB by Nucleotide ID:ENST00000672761Re-query CCDS DB by Protein ID:ENSP00000500108
Original member Current member EBI ENST00000673032.1 ENSP00000500778.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673032.1Link to Ensembl Protein Viewer:ENSP00000500778.1Re-query CCDS DB by Nucleotide ID:ENST00000673032Re-query CCDS DB by Protein ID:ENSP00000500778
Original member Current member EBI ENST00000684117.1 ENSP00000508337.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684117.1Link to Ensembl Protein Viewer:ENSP00000508337.1Re-query CCDS DB by Nucleotide ID:ENST00000684117Re-query CCDS DB by Protein ID:ENSP00000508337
Original member Current member NCBI NM_001282631.2 NP_001269560.2 Accepted alive Link to Nucleotide Sequence:NM_001282631.2Link to Protein Sequence:NP_001269560.2Re-query CCDS DB by Nucleotide ID:NM_001282631Re-query CCDS DB by Protein ID:NP_001269560Link to BLAST:NP_001269560.2

Chromosomal Locations for CCDS 75949.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 2934832 2935190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2936742 2936863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2938095 2938257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2943065 2943199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2945998 2946134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2949304 2949727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2953143 2953265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2955416 2955537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 2960378 2960400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGTTACATCTGCACCATTCTTGGACTCCGAATATTGACCGCCTTGCAGAGGACGGCGTGAAGCTGACCC
AACACATCTCTGCCGCATCTTTGTGCACCCCAAGCAGAGCCGCCTTCCTCACGGGCAGATACCCTGTGCG
ATCAGGGATGGTTTCCAGCATTGGTTACCGTGTTCTTCAGTGGACCGGAGCATCTGGAGGTCTTCCAACA
AATGAGACAACTTTTGCAAAAATACTGAAAGAGAAAGGCTATGCCACTGGACTCATTGGAAAATGGCATC
TGGGTCTCAACTGTGAGTCAGCCAGTGATCATTGCCACCACCCTCTCCATCATGGCTTTGACCATTTCTA
CGGAATGCCTTTCTCCTTGATGGGTGATTGCGCCCGCTGGGAACTCTCAGAGAAGCGTGTCAACCTGGAA
CAAAAACTCAACTTCCTCTTCCAAGTCCTGGCCTTGGTTGCCCTCACACTGGTAGCAGGGAAGCTCACAC
ACCTGATACCCGTCTCGTGGATGCCGGTCATCTGGTCAGCCCTTTCGGCCGTCCTCCTCCTCGCAAGCTC
CTATTTTGTGGGTGCTCTGATTGTCCATGCCGATTGCTTTCTGATGAGAAACCACACCATCACGGAGCAG
CCCATGTGCTTCCAAAGAACGACACCCCTTATTCTGCAGGAGGTTGCGTCCTTTCTCAAAAGGAATAAGC
ATGGGCCTTTCCTCCTCTTTGTTTCCTTTCTACACGTTCACATCCCTCTTATCACTATGGAGAACTTCCT
CGGGAAGAGTCTCCACGGGCTGTATGGGGACAACGTAGAGGAGATGGACTGGATGGTAGGACGGATCCTT
GACACTTTGGACGTGGAGGGTTTGAGCAACAGCACCCTCATTTATTTTACGTCGGATCACGGCGGTTCCC
TAGAGAATCAACTTGGAAACACCCAGTATGGTGGCTGGAATGGAATTTATAAAGGTGGGAAGGGCATGGG
AGGATGGGAAGGTGGGATCCGCGTGCCCGGGATCTTCCGCTGGCCCGGGGTGCTCCCGGCCGGCCGAGTG
ATTGGCGAGCCCACGAGTCTGATGGACGTGTTCCCCACCGTGGTCCGGCTGGCGGGCGGCGAGGTGCCCC
AGGACAGAGTGATTGACGGCCAAGACCTTCTGCCCTTGCTCCTGGGGACAGCCCAACACTCAGACCACGA
GTTCCTGATGCATTATTGTGAGAGGTTTCTGCACGCAGCCAGGTGGCATCAACGGGACAGAGGAACAATG
TGGAAAGTCCACTTTGTGACGCCTGTGTTCCAGCCAGAGGGAGCCGGTGCCTGCTATGGAAGAAAGGTCT
GCCCGTGCTTTGGGGAAAAAGTAGTCCACCACGATCCACCTTTGCTCTTTGACCTCTCAAGAGACCCTTC
TGAGACCCACATCCTCACACCAGCCTCAGAGCCCGTGTTCTATCAGGTGATGGAACGAGTCCAGCAGGCG
GTGTGGGAACACCAGCGGACACTCAGCCCAGTTCCTCTGCAGCTGGACAGGCTGGGCAACATCTGGAGAC
CGTGGCTGCAGCCCTGCTGTGGCCCGTTCCCCCTCTGCTGGTGCCTTAGGGAAGATGACCCACAATAA

Translation (535 aa):
MLHLHHSWTPNIDRLAEDGVKLTQHISAASLCTPSRAAFLTGRYPVRSGMVSSIGYRVLQWTGASGGLPT
NETTFAKILKEKGYATGLIGKWHLGLNCESASDHCHHPLHHGFDHFYGMPFSLMGDCARWELSEKRVNLE
QKLNFLFQVLALVALTLVAGKLTHLIPVSWMPVIWSALSAVLLLASSYFVGALIVHADCFLMRNHTITEQ
PMCFQRTTPLILQEVASFLKRNKHGPFLLFVSFLHVHIPLITMENFLGKSLHGLYGDNVEEMDWMVGRIL
DTLDVEGLSNSTLIYFTSDHGGSLENQLGNTQYGGWNGIYKGGKGMGGWEGGIRVPGIFRWPGVLPAGRV
IGEPTSLMDVFPTVVRLAGGEVPQDRVIDGQDLLPLLLGTAQHSDHEFLMHYCERFLHAARWHQRDRGTM
WKVHFVTPVFQPEGAGACYGRKVCPCFGEKVVHHDPPLLFDLSRDPSETHILTPASEPVFYQVMERVQQA
VWEHQRTLSPVPLQLDRLGNIWRPWLQPCCGPFPLCWCLREDDPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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