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Report for CCDS25258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25258.1 Public Mus musculus 11 Rsad1 23 108 98 CCDS HistoryNCBI Gene:237926Re-query CCDS DB by CCDS ID:25258.1Re-query CCDS DB by GeneID:237926See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040487.3 ENSMUSP00000037361.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040487.3Link to Ensembl Protein Viewer:ENSMUSP00000037361.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000040487Re-query CCDS DB by Protein ID:ENSMUSP00000037361
Original member Current member NCBI NM_001013381.2 NP_001013399.1 Accepted alive Link to Nucleotide Sequence:NM_001013381.2Link to Protein Sequence:NP_001013399.1Re-query CCDS DB by Nucleotide ID:NM_001013381Re-query CCDS DB by Protein ID:NP_001013399Link to BLAST:NP_001013399.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013399.1 442 Q5SUV1 442 100% 0 0

Chromosomal Locations for CCDS 25258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94542530 94542647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94542881 94542984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94543294 94543348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94543555 94543702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94544105 94544168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94544420 94544785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94548159 94548363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94548471 94548604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94548983 94549117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGGTTCCCTCCGGGGTCCGGACCGGCAGATGGGTGGCAGCGGCCAGGGCGGCCCAGCGGCGCCCCCGTG
TGGACAGCTTGGGACAGCCTCCGAGTCCTGAGTCCGCGAGCACGCGTGCGGCGCTTTACGTGCACTGGCC
TTATTGCGAGAAACGCTGCAGCTACTGCAACTTCAATAAGTACATCCCCCGCGGCGTGGAGGAGGGGACC
GTGCGGAATTGCCTGGTGACTGAGGCAAGGACGCTGCTGCGGCTCAGCGGGGTGCAGAGAGTAGAGTCTG
TGTTCTTTGGTGGAGGAACCCCGAGTCTGGCCAGTCCCCACACTGTGGCTGCTGTCCTGGAGGCTGTGGC
TCAGGAAGTCTACCTGCCTGCCGATTCGGAAGTCACCTTGGAGGCTAACCCCACTTCAGCCCCAGGTCCT
AGGCTGGCAGCTTTTGGAGCAGCAGGAGTGAACAGGTTGTCCATTGGTTTACAGTCCCTGGATGACGCGG
AGCTGCAGCTGCTGGGCCGGACTCACTCAGCCAGCGACGCTTTACGGACTCTGGCGGAAGCCCGGCTCCT
TTTCCCTGGCAGAGTGTCGGTGGATTTGATGCTGGGGTTACCGGCACAGAAGGTGGAGCCGTGGCTTCAA
CAGCTTCAGAAACTGCTGTACCACTGTGACGACCACCTCTCCCTCTACCAGCTGACCCTGGAACGGGGCA
CCTCACTCTTTGCCCAGGTGCAGCAGGGTACCCTCCCGGCCCCTGACCCGGACCTGGCTGCTGAGATGTA
CCAGGAGGGCAGGACAGTCCTTCGAGATGCTGGCTTTCGCCAATATGAGGTCTCCAATTTTGCACGGAAC
GGGGCGCTCAGTACCCATAACTGGACGTACTGGCAGTGCGGTCAGTACCTTGGCATTGGGCCTGGAGCCC
ATGGAAGATTTGTGCCCCAGGGAACTGGAGGCCATACCCGGGAAGCACGGATCCAGACACTGGAGCCAGA
CAATTGGATGAAAGAGGTGACGCTCTTTGGTCATGGCACCCGGAAGTGCGTTCGCCTGGGAAAGCTGGAA
CTGCTAGAGGAGGTTTTGGCTATGGGGCTGCGTACTGATGTTGGAGTCACTCACCAGCACTGGCAGCAGT
TTGAGCCCCAGCTGACCCTGTGGGACGTGTTTGGAGCAAGCAAGGAGGTGGAGGAGCTGCTAGCTCAGGG
TCTGCTGCTGCTGGATTACAGGGGTCTCCGGTGTTCCTGGGAGGGCCTAGCTGTGCTGGACTCCCTGTTA
TTGACCCTCCTACCTCAACTCCAAGAGGCCTGGCAGCACAGGCCTTCCTCACCCGTGTCAGGAGGATGA

Translation (442 aa):
MVPSGVRTGRWVAAARAAQRRPRVDSLGQPPSPESASTRAALYVHWPYCEKRCSYCNFNKYIPRGVEEGT
VRNCLVTEARTLLRLSGVQRVESVFFGGGTPSLASPHTVAAVLEAVAQEVYLPADSEVTLEANPTSAPGP
RLAAFGAAGVNRLSIGLQSLDDAELQLLGRTHSASDALRTLAEARLLFPGRVSVDLMLGLPAQKVEPWLQ
QLQKLLYHCDDHLSLYQLTLERGTSLFAQVQQGTLPAPDPDLAAEMYQEGRTVLRDAGFRQYEVSNFARN
GALSTHNWTYWQCGQYLGIGPGAHGRFVPQGTGGHTREARIQTLEPDNWMKEVTLFGHGTRKCVRLGKLE
LLEEVLAMGLRTDVGVTHQHWQQFEPQLTLWDVFGASKEVEELLAQGLLLLDYRGLRCSWEGLAVLDSLL
LTLLPQLQEAWQHRPSSPVSGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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