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Report for CCDS22448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22448.1 Public Mus musculus 8 Tbc1d9 23 108 98 CCDS HistoryNCBI Gene:71310Re-query CCDS DB by CCDS ID:22448.1Re-query CCDS DB by GeneID:71310See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034145.10 ENSMUSP00000034145.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034145.10Link to Ensembl Protein Viewer:ENSMUSP00000034145.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034145Re-query CCDS DB by Protein ID:ENSMUSP00000034145
Original member Current member NCBI NM_027758.4 NP_082034.1 Accepted alive Link to Nucleotide Sequence:NM_027758.4Link to Protein Sequence:NP_082034.1Re-query CCDS DB by Nucleotide ID:NM_027758Re-query CCDS DB by Protein ID:NP_082034Link to BLAST:NP_082034.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082034.1 1031 Q3UYK3-2 1031 100% 0 0

Chromosomal Locations for CCDS 22448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83166075 83166204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83210421 83210531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83221438 83221556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83239831 83240037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83241538 83241708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83242522 83242672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83249402 83249616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83253458 83253575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83254627 83254912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83255795 83255924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83258995 83259093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83259304 83259372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83260919 83261159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83264847 83264912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83266081 83266167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83268983 83269057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83269144 83269247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83270894 83271610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3096 nt):
ATGTGGGTGAATCCGGAGGAGGTACTGCTGGCCAACGCGCTGTGGATCACCGAGAGAGCCAACCCCTACT
TCATTCTGCAACGAAGGAAGGGCCACGGGGGCGACGGGGGTGGCGGCGGCGGATTGGCGGGCCTCCTTGT
GGGTACCCTCGATGTGGTATTGGACTCCAGTGCCCGAGTCGCACCGTACCGAATCCTTTATCAAACTCCA
GACTCTCTAGTCTATTGGACCATTGCCTGTGGTGGCTCCAGGAAGGAGGTTACTGAGCACTGGGAATGGC
TTGAACAGAACCTACTGCAGACACTCTCCATCTTTGAGAATGAGAATGACGTCACCACATTTGTAAGAGG
GAAAATACAGGTAACCATCGTGGAGAAGGCCGACAGCTGCAGTGTGCTCCCCAGCCCTCTGTCCATCAGC
ACCAGGAACAGGATGACCTTCCTGTTCGCGAACTTGAAAGACAGAGACTTTCTGGTGCAGAGGATCTCAG
ATTTCTTGCAGCAAACGACTTCTAGGATCTACTCAGACAAAGAGTTTTCAGGAAGCTGCAACAGCTCAGA
TGATGAGGTGTATTCTCGGCCCAGCAGCCTCGTTTCCTCCAGTCCCCAGAGAAGCACAAGCTCGGATGCT
GATGGAGAACGCCCCTTTAACCTCAATGGCAACAGTGTCCCTACAGCCACCCAGACCCTCATGACCATGT
ACCGGCGGCGATCTCCTGAAGAATTCAACCCAAAATTGGCCAAAGAGTTTTTGAAAGAACAAGCCTGGAA
GATTCACTTTGCTGAGTATGGGCAGGGAATCTGCATGTACCGCACAGAGAAGACCCGGGAGCTGGTGCTG
AAGGGCATCCCAGAGAGCATGCGCGGAGAGCTCTGGCTGCTGCTTTCAGGGGCCATCAATGAAAAGGCCA
CACACCCCGGGTACTACGAGGGCCTCGTGGAGAAGTCGATGGGAAAGTACAATCTGGCCACCGAGGAGAT
TGAGAGAGACTTACACCGCTCCCTTCCAGAACACCCAGCTTTCCAGAACGAAATGGGCATCGCGGCTCTG
AGGAGAGTCTTAACGGCTTATGCTTTTCGCAATCCCAACATAGGATACTGCCAGGCCATGAACATTGTCA
CTTCAGTGCTACTGCTGTATGCCAAAGAGGAGGAGGCCTTCTGGCTGCTTGTGGCCTTGTGTGAGCGCAT
GCTTCCCGACTACTACAACACCAGAGTTGTAGGTGCCCTGGTGGACCAGGGAGTCTTCGAGGAGCTGGCT
CGAGACTATGTCCCGCAGCTGTACGACTGCATGCAGGACCTGGGGGTGATCTCTACCATCTCCCTGTCGT
GGTTCCTCACACTCTTCCTCAGTGTGATGCCATTTGAGAGTGCAGTGGTGGTTGTGGACTGTTTCTTCTA
TGAAGGAATCAAAGTGATATTTCAGCTGGCTCTCGCTGTACTGGATGCCAACGTGGATAAACTCTTGAAC
TGCAAGGACGATGGAGAGGCCATGACTGTTTTGGGAAGGTACCTAGACAGTGTGACCAACAAAGACAGCA
CCCTGCCTCCCATCCCCCATCTCCACTCCCTGCTCAGTGACGACGTGGGGCCCTACCCTGCCGTGGACAT
CTTCAGACTCATAGGGACGTCTTACGAGAAATTTGGAACTATCCGGGCCGATTTGATTGAGCAGATGCGA
TTCAAGCAGAGGCTGAAAGTGATCCAGACCCTGGAGGACACCACCAAACGCAATGTGGTACGGACCATTG
TGACGGAGACGTCCTTCACCATCGATGAGCTGGAAGAACTGTACGCTCTTTTCAAGGCTGAGCATCTGAC
CAGCTGCTACTGGGGTGGGAGCAGCAATGCCCTGGACCGACACGACCCCAGCCTGCCTTACCTGGAGCAG
TACCGCATCGACTTTGAGCAGTTCAAGGGCATGTTCGTGCTGCTCTTTCCCTGGGCGTGTGGCACACACT
CCGATGTGCTGGCCTCCCGCCTGTTCCAGCTGTTAGATGAGAATGGAGACTCCTTGATTAACTTCCGAGA
GTTCGTCTCTGGGCTGAGTGCTGCATGCCATGGGGACCTCACAGAGAAACTCAAACTCCTGTACAAGATG
CACGTCTTGCCTGAGCCATCCTGTGATCAAGATGAGCCTGACTCCGCCTTTGAAGCCACTCAGTACTTTT
TTGAAGACATCACCCCAGAATGCACACATGTTGTTGGCTTGGACAGTAGAGGCAAGCAGAGTGCGGACGA
CGGCTTCGTCACAGTGAGCCTGAAGCAGGACAGAGGGAAAAGGGCAAATTCTCAAGAAAACCGTAATTAC
CTAAAACTCTGGACTGCAGAAAATAAGTCTAAGTCAAAAACTGCCAAGGATTTGCCCAAGCTGAACCAGG
GGCAGTTTATTGAGCTCTGTAAGACCATGTACAACATGTTCAGTGAAGACCCCAATGAGCAGGAGCTGTA
CCATGCCACAGCTGCGGTGACCAGCCTCCTGCTGGAGATCGGAGAGGTTGGCAAGTTCTTCATTACTCAG
CCGGCAAAGGAAGATGCAGTTCCTGGACCACCCTGCGGCCAGGCCATCCCAGGCATGCTCTTCCCTAAGA
AGGGGTCCAGCCAGTCCTATGTGGTGGAGTCCACAGAGCCACTCACAGCTAGCCTGGCAGTGGACAGTGA
GGAGCACTCCCTGGGAGGGCAGATGGAGGACATTAAACTGGAGGACTCCTCACCCAGGGACAACGGGGCC
TGCTCCTCCATGTTGATCTCCGATGATGACACCAAGGATGACAGCTCCATGTCATCCTACTCGGTGCTGA
GCGCCGGCTCCCACGAGGAGGACAAACTGCACTGTGAGGACATTGGAGAGGACACAGTCCTGGTGCGTAG
CAGTCAGGGTAGAGCCACCCTGCCCAGGAGCAGCAGCCTGGACCGGGACTGGGCCATCACCTTTGAGCAG
TTCCTGGCCTCGCTCTTGACGGAGCCCGCTCTCGTGAGGTACTTTGACAAGCCAGTGTGCATGATGGCCA
GGGTCACCAGTGCGAAGAACATCCGTATGATGGGCAAGCCCCTCACCTCAGCCAGTGACTATGAAATCTC
TGCCCTGTCGGGCTGA

Translation (1031 aa):
MWVNPEEVLLANALWITERANPYFILQRRKGHGGDGGGGGGLAGLLVGTLDVVLDSSARVAPYRILYQTP
DSLVYWTIACGGSRKEVTEHWEWLEQNLLQTLSIFENENDVTTFVRGKIQVTIVEKADSCSVLPSPLSIS
TRNRMTFLFANLKDRDFLVQRISDFLQQTTSRIYSDKEFSGSCNSSDDEVYSRPSSLVSSSPQRSTSSDA
DGERPFNLNGNSVPTATQTLMTMYRRRSPEEFNPKLAKEFLKEQAWKIHFAEYGQGICMYRTEKTRELVL
KGIPESMRGELWLLLSGAINEKATHPGYYEGLVEKSMGKYNLATEEIERDLHRSLPEHPAFQNEMGIAAL
RRVLTAYAFRNPNIGYCQAMNIVTSVLLLYAKEEEAFWLLVALCERMLPDYYNTRVVGALVDQGVFEELA
RDYVPQLYDCMQDLGVISTISLSWFLTLFLSVMPFESAVVVVDCFFYEGIKVIFQLALAVLDANVDKLLN
CKDDGEAMTVLGRYLDSVTNKDSTLPPIPHLHSLLSDDVGPYPAVDIFRLIGTSYEKFGTIRADLIEQMR
FKQRLKVIQTLEDTTKRNVVRTIVTETSFTIDELEELYALFKAEHLTSCYWGGSSNALDRHDPSLPYLEQ
YRIDFEQFKGMFVLLFPWACGTHSDVLASRLFQLLDENGDSLINFREFVSGLSAACHGDLTEKLKLLYKM
HVLPEPSCDQDEPDSAFEATQYFFEDITPECTHVVGLDSRGKQSADDGFVTVSLKQDRGKRANSQENRNY
LKLWTAENKSKSKTAKDLPKLNQGQFIELCKTMYNMFSEDPNEQELYHATAAVTSLLLEIGEVGKFFITQ
PAKEDAVPGPPCGQAIPGMLFPKKGSSQSYVVESTEPLTASLAVDSEEHSLGGQMEDIKLEDSSPRDNGA
CSSMLISDDDTKDDSSMSSYSVLSAGSHEEDKLHCEDIGEDTVLVRSSQGRATLPRSSSLDRDWAITFEQ
FLASLLTEPALVRYFDKPVCMMARVTSAKNIRMMGKPLTSASDYEISALSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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