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Report for CCDS27749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27749.1 Public Mus musculus 15 Cpt1b 23 108 98 CCDS HistoryNCBI Gene:12895Re-query CCDS DB by CCDS ID:27749.1Re-query CCDS DB by GeneID:12895See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109313.8 ENSMUSP00000104936.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109313.8Link to Ensembl Protein Viewer:ENSMUSP00000104936.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109313Re-query CCDS DB by Protein ID:ENSMUSP00000104936
Original member Current member NCBI NM_009948.2 NP_034078.2 Accepted alive Link to Nucleotide Sequence:NM_009948.2Link to Protein Sequence:NP_034078.2Re-query CCDS DB by Nucleotide ID:NM_009948Re-query CCDS DB by Protein ID:NP_034078Link to BLAST:NP_034078.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034078.2 772 Q924X2 772 100% 0 0

Chromosomal Locations for CCDS 27749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89416896 89416979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89417145 89417237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89417832 89417945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89418732 89418884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89418976 89419110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89419191 89419355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89419892 89420008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89420088 89420193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89420692 89420877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89421345 89421540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89422125 89422209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89422289 89422396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89423492 89423569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89423656 89423793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89423940 89424041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89424265 89424442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89424717 89424856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89425188 89425328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2319 nt):
ATGGCGGAAGCACACCAGGCAGTAGCTTTCCAGTTCACTGTGACCCCAGACGGGGTCGACTTCCGGCTTA
GTCGGGAGGCTCTGAGACACATCTACCTGTCTGGAATCAACTCCTGGAAGAAACGCCTTATTCGAATCAA
GAATGGCATCCTTAGGGGTGTGTACCCTGGCAGCCCCACCAGCTGGCTGGTTGTTGTCATGGCAACAGTT
GGTTCCAACTACTGCAAGGTGGACATCTCCATGGGACTGGTCGATTGCATCCAGAGATGCCTCCCGGAAA
GGTATGGCCACTTTGGGACCCCACAGACAGAGGCACTTCTCAGCATGGTCATCTTCTCCACCGGAGTCTG
GGCGACAGGCATTTTCTTCTTCCGACAAACCCTGAAGCTGCTGCTCTCCTACCACGGGTGGATGTTCGAG
ATGCACAGCAAGACCAGCCATGCCACCAAGATCTGGGCTATCTGTGTCCGTCTCCTGTCCAGCCGGCGGC
CCATGCTCTACAGCTTCCAAACGTCACTGCCTAAGCTTCCTGTCCCCAGCGTGCCAGCCACAATTCACCG
GTACTTGGATTCTGTGCGGCCCTTATTGGATGATGAAGCATATTACCGCATGGAGACATTGGCCAAGGAA
TTCCAGGACAAGACTGCCCCCAGGCTGCAGAAATACCTGGTGCTCAAGTCATGGTGGGCAACTAACTATG
TGAGTGACTGGTGGGAAGAATATGTCTACCTCCGAAGCAGGAGCCCCCTCATGGTGAACAGCAACTATTA
TGCCATGGATTTTGTGCTTATTAAGAACACAAATGTGCAAGCAGCCCGTCTAGGCAATGCCGTTCACGCC
ATGATCATGTATCGCCGCAAACTGGACCGTGAAGAGATCAAGCCGGTCATGGCACTGGGTATGGTGCCCA
TGTGCTCCTACCAGATGGAGAGGATGTTCAACACTACACGCATCCCAGGCAAAGAGACAGACTTGCTACA
GCACCTCTCAGAGAGCAGGCACGTGGCTGTCTACCACAAAGGTCGCTTCTTCAAGGTCTGGCTCTATGAG
GGCTCGCGCCTGCTCAAGCCCCGAGACCTGGAGATGCAGTTCCAGAGAATCCTCGACGACCCTTCCCCAC
CTCAGCCTGGGGAGGAGAAGCTGGCAGCCCTCACCGCAGGAGGAAGGGTAGAGTGGGCAGAGGCACGTCA
GACCTTCTTCAGCTCTGGCAAGAACAAGATGTCTCTGGACGCCATCGAACGTGCTGCTTTCTTTGTGACC
CTGGATGAAGATTCTCATTGCTACAACCCTGACGATGAGACCAGTCTTAGCCTCTACGGCAAAGCCTTGC
TCCATGGCAACTGCTATAACAGGTGGTTTGACAAATCTTTCACCCTTATCTCCTGCAAGAATGGCCTGTT
AGGCCTCAACACCGAACACTCGTGGGCAGACGCGCCCATCATTGGGCACCTCTGGGAGTTTGTCCTGGGC
ACTGATACCTTTCACCTGGGCTACACGGAGACAGGACACTGTGTGGGTGAGCCAAACACCACGTTGCCAC
CCCCTCAGCGGCTGCCGTGGGACATTCCCGAGCAGTGCCGGGAAGCCATCGAGAACTCGTACCAAGTAGC
CAAGGCACTGGCCGATGACGTGGAGCTCTACTGCTTCCAGTTCTTACCCTTTGGCAAAGGTCTTATCAAG
AAGTGTAGGACCAGCCCCGACGCTTTTGTGCAGATTGCCCTACAGCTGGCTCATTTCCGGGACAAAGGCA
AGTTCTGCCTGACTTACGAGGCCTCGATGACAAGAATGTTCCGAGAGGGGCGGACTGAGACTGTGCGTTC
CTGTACCAACGAGTCCGCAGCCTTTGTGCAGGCCATGATGAAGGGGTCCCATAAGAAACAAGACCTCCAA
GATCTCTTCCGGAAAGCCTCCGAAAAGCACCAAAACATGTACCGCCTAGCCATGACAGGGGCTGGGATCG
ACCGGCACCTCTTCTGCCTTTACATCGTCTCCAAGTACTTAGGAGTTAGCTCTCCTTTCCTGGCTGAGGT
ACTTTCTGAACCCTGGAGCCTCTCCACCAGCCAGATCCCCCAGTTCCAGATCTGCATGTTTGACCCAAAA
CAGTATCCCAATCATCTGGGTGCTGGAGGTGGCTTTGGTCCCGTGGCGGATGATGGCTACGGGGTCTCTT
ACATGATCGCAGGAGAAAACACCATGTTCTTCCACATCTCCAGCAAATACTCAAGTTCAGAGACGAACGC
CCAGCGCTTTGGGAACCACATCCGCCAAGCACTGTTGGACATCGCCGAACTTTTCAAAATTTCCAAGACA
GACAGCTGA

Translation (772 aa):
MAEAHQAVAFQFTVTPDGVDFRLSREALRHIYLSGINSWKKRLIRIKNGILRGVYPGSPTSWLVVVMATV
GSNYCKVDISMGLVDCIQRCLPERYGHFGTPQTEALLSMVIFSTGVWATGIFFFRQTLKLLLSYHGWMFE
MHSKTSHATKIWAICVRLLSSRRPMLYSFQTSLPKLPVPSVPATIHRYLDSVRPLLDDEAYYRMETLAKE
FQDKTAPRLQKYLVLKSWWATNYVSDWWEEYVYLRSRSPLMVNSNYYAMDFVLIKNTNVQAARLGNAVHA
MIMYRRKLDREEIKPVMALGMVPMCSYQMERMFNTTRIPGKETDLLQHLSESRHVAVYHKGRFFKVWLYE
GSRLLKPRDLEMQFQRILDDPSPPQPGEEKLAALTAGGRVEWAEARQTFFSSGKNKMSLDAIERAAFFVT
LDEDSHCYNPDDETSLSLYGKALLHGNCYNRWFDKSFTLISCKNGLLGLNTEHSWADAPIIGHLWEFVLG
TDTFHLGYTETGHCVGEPNTTLPPPQRLPWDIPEQCREAIENSYQVAKALADDVELYCFQFLPFGKGLIK
KCRTSPDAFVQIALQLAHFRDKGKFCLTYEASMTRMFREGRTETVRSCTNESAAFVQAMMKGSHKKQDLQ
DLFRKASEKHQNMYRLAMTGAGIDRHLFCLYIVSKYLGVSSPFLAEVLSEPWSLSTSQIPQFQICMFDPK
QYPNHLGAGGGFGPVADDGYGVSYMIAGENTMFFHISSKYSSSETNAQRFGNHIRQALLDIAELFKISKT
DS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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