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Report for CCDS29395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29395.1 Public Mus musculus 19 Cpt1a 23 108 98 CCDS HistoryNCBI Gene:12894Re-query CCDS DB by CCDS ID:29395.1Re-query CCDS DB by GeneID:12894See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29395.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025835.5 ENSMUSP00000025835.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025835.5Link to Ensembl Protein Viewer:ENSMUSP00000025835.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025835Re-query CCDS DB by Protein ID:ENSMUSP00000025835
Original member Current member NCBI NM_013495.2 NP_038523.2 Accepted alive Link to Nucleotide Sequence:NM_013495.2Link to Protein Sequence:NP_038523.2Re-query CCDS DB by Nucleotide ID:NM_013495Re-query CCDS DB by Protein ID:NP_038523Link to BLAST:NP_038523.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038523.2 773 P97742 773 100% 0 0

Chromosomal Locations for CCDS 29395.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3349202 3349342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3352485 3352624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3356317 3356488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3358176 3358277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3362085 3362222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3364478 3364555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3365675 3365782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3366330 3366417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3368855 3369050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3370707 3370895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3371572 3371677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3375093 3375209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3376411 3376575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3378368 3378502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3380017 3380169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3381610 3381723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3381932 3382024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3383755 3383841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2322 nt):
ATGGCAGAGGCTCACCAAGCTGTGGCCTTCCAGTTCACAGTCACCCCTGATGGCATCGATCTCCGCCTGA
GCCATGAAGCCCTCAAACAGATCTGCCTGTCAGGGCTGCACTCCTGGAAGAAGAAGTTCATCCGATTCAA
GAATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATA
TCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCA
CTGGCCGCATGTCAAGCCAGACGAAGAACATCGTGAGTGGCGTCCTCTTTGGCACAGGGCTCTGGGTGGC
GATCATCATGACTATGCGCTACTCGCTGAAGGTGCTGCTCTCCTACCATGGCTGGATGTTTGCAGAGCAC
GGCAAAATGAGCCGCAGCACCAGAATCTGGATGGCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGT
TGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGGTACCT
GGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCT
GTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTATGTGAGTG
ACTGGTGGGAGGAATACATCTACCTGCGGGGCCGAGGGCCGATCATGGTTAACAGCAACTACTACGCCAT
GGAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTG
CTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCTATTCGTCTTCTGGGATCTACAATTCCCCTCT
GCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAGACACCATCCAACA
CGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGAC
GGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGC
AGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAGAGTGCCCTGGGCGAAGTGTCGGCAGAC
CTATTTTGCACGAGGAAAAAATAAGCAATCTCTGGATGCGGTAGAAAAGGCAGCATTCTTCGTGACGTTG
GACGAATCGGAACAGGGATATAGAGAGGAGGACCCTGAGGCATCTATTGACAGCTATGCCAAATCTCTGC
TGCATGGTAGATGTTTCGACAGGTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGAT
AGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAGTATGTCATGGCC
ACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCA
AACCCACCAGGCTACAGTGGGACATTCCAGGAGAATGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGC
CAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAG
AAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAGGACATGGGCA
AGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTC
CTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACGGCAGAGCAGAGGTTC
AAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCG
ACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAGGT
ACTGTCTGAGCCATGGAGGTTGTCCACGAGCCAGACTCCTCAGCAGCAGGTGGAACTGTTTGACTTTGAG
AAATACCCTGACTATGTGTCCTGTGGCGGGGGCTTTGGGCCGGTTGCTGATGACGGCTATGGTGTTTCCT
ACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCCAAGTTCTCTAGCCCTGAGACAGACTC
ACACCGCTTTGGGAAGCACTTGAGACAAGCCATGATGGACATTATCACCTTGTTTGGCCTCACCGCCAAT
TCCAAAAAGTAA

Translation (773 aa):
MAEAHQAVAFQFTVTPDGIDLRLSHEALKQICLSGLHSWKKKFIRFKNGIITGVFPASPSSWLIVVVGVI
SSMHTKVDPSLGMIAKINRTLDTTGRMSSQTKNIVSGVLFGTGLWVAIIMTMRYSLKVLLSYHGWMFAEH
GKMSRSTRIWMAMVKVFSGRKPMLYSFQTSLPRLPVPAVKDTVSRYLESVRPLMKEGDFQRMTALAQDFA
VNLGPKLQWYLKLKSWWATNYVSDWWEEYIYLRGRGPIMVNSNYYAMEMLYITPTHIQAARAGNTIHAIL
LYRRTVDREELKPIRLLGSTIPLCSAQWERLFNTSRIPGEETDTIQHVKDSRHIVVYHRGRYFKVWLYHD
GRLLRPRELEQQMQQILDDTSEPQPGEAKLAALTAADRVPWAKCRQTYFARGKNKQSLDAVEKAAFFVTL
DESEQGYREEDPEASIDSYAKSLLHGRCFDRWFDKSITFVVFKNSKIGINAEHSWADAPIVGHLWEYVMA
TDVFQLGYSEDGHCKGDKNPNIPKPTRLQWDIPGECQEVIETSLSSASFLANDVDLHSFPFDTFGKGLIK
KCRTSPDAFIQLALQLAHYKDMGKFCLTYEASMTRLFREGRTETVRSCTTESCNFVLAMMDPTTTAEQRF
KLFKIACEKHQHLYRLAMTGAGIDRHLFCLYVVSKYLAVDSPFLKEVLSEPWRLSTSQTPQQQVELFDFE
KYPDYVSCGGGFGPVADDGYGVSYIIVGENFIHFHISSKFSSPETDSHRFGKHLRQAMMDIITLFGLTAN
SKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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