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Report for CCDS42177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42177.1 Public Homo sapiens 16 MATCAP1 24 110 108 CCDS HistoryNCBI Gene:653319Re-query CCDS DB by CCDS ID:42177.1Re-query CCDS DB by GeneID:653319See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42177.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290881.11 ENSP00000290881.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000290881.11Link to Ensembl Protein Viewer:ENSP00000290881.7Re-query CCDS DB by Nucleotide ID:ENST00000290881Re-query CCDS DB by Protein ID:ENSP00000290881
Original member Current member EBI ENST00000563902.2 ENSP00000456838.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000563902.2Link to Ensembl Protein Viewer:ENSP00000456838.1Re-query CCDS DB by Nucleotide ID:ENST00000563902Re-query CCDS DB by Protein ID:ENSP00000456838
Original member Current member NCBI NM_001040715.2 NP_001035805.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040715.2Link to Protein Sequence:NP_001035805.1Re-query CCDS DB by Nucleotide ID:NM_001040715Re-query CCDS DB by Protein ID:NP_001035805Link to BLAST:NP_001035805.1
Original member Current member NCBI NM_001369680.1 NP_001356609.1 Accepted alive Link to Nucleotide Sequence:NM_001369680.1Link to Protein Sequence:NP_001356609.1Re-query CCDS DB by Nucleotide ID:NM_001369680Re-query CCDS DB by Protein ID:NP_001356609Link to BLAST:NP_001356609.1
Original member Current member NCBI NM_001369681.1 NP_001356610.1 Accepted alive Link to Nucleotide Sequence:NM_001369681.1Link to Protein Sequence:NP_001356610.1Re-query CCDS DB by Nucleotide ID:NM_001369681Re-query CCDS DB by Protein ID:NP_001356610Link to BLAST:NP_001356610.1
Original member Current member NCBI NM_001369682.1 NP_001356611.1 Accepted alive Link to Nucleotide Sequence:NM_001369682.1Link to Protein Sequence:NP_001356611.1Re-query CCDS DB by Nucleotide ID:NM_001369682Re-query CCDS DB by Protein ID:NP_001356611Link to BLAST:NP_001356611.1
Original member Current member NCBI NM_001369684.1 NP_001356613.1 Accepted alive Link to Nucleotide Sequence:NM_001369684.1Link to Protein Sequence:NP_001356613.1Re-query CCDS DB by Nucleotide ID:NM_001369684Re-query CCDS DB by Protein ID:NP_001356613Link to BLAST:NP_001356613.1
Original member Current member NCBI NM_001369685.1 NP_001356614.1 Accepted alive Link to Nucleotide Sequence:NM_001369685.1Link to Protein Sequence:NP_001356614.1Re-query CCDS DB by Nucleotide ID:NM_001369685Re-query CCDS DB by Protein ID:NP_001356614Link to BLAST:NP_001356614.1
Original member Current member NCBI NM_001369686.1 NP_001356615.1 Accepted alive Link to Nucleotide Sequence:NM_001369686.1Link to Protein Sequence:NP_001356615.1Re-query CCDS DB by Nucleotide ID:NM_001369686Re-query CCDS DB by Protein ID:NP_001356615Link to BLAST:NP_001356615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035805.1 471 Q68EN5-1 471 100% 0 0
NP_001356609.1 471 Q68EN5-1 471 100% 0 0
NP_001356610.1 471 Q68EN5-1 471 100% 0 0
NP_001356611.1 471 Q68EN5-1 471 100% 0 0
NP_001356613.1 471 Q68EN5-1 471 100% 0 0
NP_001356614.1 471 Q68EN5-1 471 100% 0 0
NP_001356615.1 471 Q68EN5-1 471 100% 0 0

Chromosomal Locations for CCDS 42177.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67176811 67176975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67178010 67178107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67178199 67178504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67179430 67179562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67179815 67179958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67180041 67180610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGTGCTGGACTCAGGGGCTCAGGCGTATGATCAGGCACCCCCCAGCCCGCCTACCAGTCCCCCATCCC
TGCGCCATAGGCTGAAGCCCTCAGACCGAGATGGGCCACCACTGTACCCCTGGTCTCAGTCCCTGGCCTT
GCCCCTGGCTCTGGCAGTCCCCCCAGCGCTGCAGCCCCAGCCTGAGCAGCAGCCGTTCTCACAGATGCTC
CTGGGCCACCGTGGCCACATGCGTCGCAGTGAGAGCACCTACTCTGTAAATAGTACTGGCCGGCGGGGGC
GTGGCACCCTGGGACGGCCTCCACCTGGACGGGGACGGAACCCAGGTGGGGGCACCCTGCGGCCTGCAGC
CTCCCTGCCTCACATTGCTAAGACTCAAAGGGATGCAGGCCATATTGCCAGCAAGAGCCCCTGCATGTTG
GTGGCCCTGCGGCCAACCAACATGGACCGTGAGCGAGACAAGTTCTTCCAGTCCCATTACACCTACAATC
CACAGTTTGAGTACCAGGAGCCCATGCCCACGGCTGTGCTGGAAAAGTACTGCGAGGCCTCTGGACAGTT
CATCCATCAGGCAGTTGGCATCATTGAGGCTGTTCTGGAGAAGTTTGGAACCTATGAACACTTTGAGGCT
GCCACTGGGGGGCAGCTGCTCACCAAGTGCCAGATATGGTCGATTGTGCGCAAATACATGCAGAAGGAGG
GCTGCGCTGGGGAGGTTGTGGTGCAGCTGAGTGAGGACCTGCTGTCCCAGGCAGTGATGATGGTGGAGAA
CAGCCGGCCCACATTGGCGATCAACCTGACCGGAGCCCGCCAGTACTGGTTGGAGGGCATGCTGCGGCAT
GAGATAGGCACCCACTACCTGCGGGGCGTGAACAACGCGCGCCAGCCGTGGCACAACGCGGAGGGCCGGC
TGCGGTACGGGCTGCGGCCGGCGAACCCCACGGAGGAGGGCCTGGCCAGCCTGCACAGCGTGCTGTTCCG
CAAGCAGCCGTTCCTGTGGCGCGCTGCACTGCTCTACTACACCATCCACCGCGCCGCGCGCATGTCCTTC
CGTCAGCTCTTCCAGGACCTGGAGCGCTACGTGCAGGACGCCGATGTGCGCTGGGAGTACTGCGTGCGCG
CCAAGCGCGGCCAGACCGACACCTCGCTGCCAGGTTGTTTCAGCAAGGACCAGGTGTACCTGGACGGCAT
CGTGCGCATTCTGCGACATCGCCAGACCATCGATTTCCCGTTGCTGACCTCACTGGGCAAGGTGTCCTAT
GAGGATGTGGACCACCTGCGGCCCCATGGGGTGCTGGATAATACCCGGGTGCCCCACTTCATGCAGGACT
TGGCACGCTACCGGCAGCAGCTGGAGCACATCATGGCCACCAACCGGCTGGATGAGGCGGAGCTGGGTCG
CCTGCTACCCGACTGA

Translation (471 aa):
MVLDSGAQAYDQAPPSPPTSPPSLRHRLKPSDRDGPPLYPWSQSLALPLALAVPPALQPQPEQQPFSQML
LGHRGHMRRSESTYSVNSTGRRGRGTLGRPPPGRGRNPGGGTLRPAASLPHIAKTQRDAGHIASKSPCML
VALRPTNMDRERDKFFQSHYTYNPQFEYQEPMPTAVLEKYCEASGQFIHQAVGIIEAVLEKFGTYEHFEA
ATGGQLLTKCQIWSIVRKYMQKEGCAGEVVVQLSEDLLSQAVMMVENSRPTLAINLTGARQYWLEGMLRH
EIGTHYLRGVNNARQPWHNAEGRLRYGLRPANPTEEGLASLHSVLFRKQPFLWRAALLYYTIHRAARMSF
RQLFQDLERYVQDADVRWEYCVRAKRGQTDTSLPGCFSKDQVYLDGIVRILRHRQTIDFPLLTSLGKVSY
EDVDHLRPHGVLDNTRVPHFMQDLARYRQQLEHIMATNRLDEAELGRLLPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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