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Report for CCDS19119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19119.1 Public Mus musculus 5 Slc4a2 23 108 98 CCDS HistoryNCBI Gene:20535Re-query CCDS DB by CCDS ID:19119.1Re-query CCDS DB by GeneID:20535See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080067.12 ENSMUSP00000078972.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080067.12Link to Ensembl Protein Viewer:ENSMUSP00000078972.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000080067Re-query CCDS DB by Protein ID:ENSMUSP00000078972
Original member Current member NCBI NM_001253892.1 NP_001240821.1 Accepted alive Link to Nucleotide Sequence:NM_001253892.1Link to Protein Sequence:NP_001240821.1Re-query CCDS DB by Nucleotide ID:NM_001253892Re-query CCDS DB by Protein ID:NP_001240821Link to BLAST:NP_001240821.1
Original member Current member NCBI NM_009207.3 NP_033233.2 Accepted alive Link to Nucleotide Sequence:NM_009207.3Link to Protein Sequence:NP_033233.2Re-query CCDS DB by Nucleotide ID:NM_009207Re-query CCDS DB by Protein ID:NP_033233Link to BLAST:NP_033233.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240821.1 1237 P13808-1 1237 99.9192% 0 1
NP_033233.2 1237 P13808-1 1237 99.9192% 0 1

Chromosomal Locations for CCDS 19119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24427586 24427636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24429416 24429578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24429704 24429948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24430031 24430149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24431209 24431441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24431523 24431665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24432762 24432942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24434104 24434239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24434338 24434503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24434635 24434749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24434833 24435017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24435115 24435340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24435545 24435760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24435842 24435990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24436077 24436271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24438695 24438949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24439056 24439145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24439232 24439398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24439737 24439990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24440081 24440250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24440404 24440577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24440672 24440752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3714 nt):
ATGAGCAGCGCCCCCAGGCGCCCCGCCTCGGGCGCAGATTCTTTGCACACGCCAGAGCCAGAGAGCCTGA
GCCCCGGAACACCTGGGTTCCCCGAGCAAGAGGAAGATGAACTTCGTACCTTAGGTGTGGAGCGGTTCGA
GGAGATCCTCCAGGAGGCTGGATCCCGGGGAGGAGAAGAGCCAGGACGAAGCTATGGAGAGGAAGACTTT
GAATACCACCGCCAGTCCTCCCACCATATCCATCATCCGCTATCCACCCACCTGCCTCCTGATGCCCGCC
GTCGCAAGACTCCCCAGGGCCCAGGACGGAAACCTCGGAGGCGCCCTGGTGCCTCTCCCACTGGAGAGAC
CCCCACTATTGAGGAAGGGGAGGAAGATGAGGAAGAAGCTAGTGAAGCTGAAGGGTTCAGAGCTCCCCCA
CAACAACCATCTCCTGCTACTACACCCTCTGCAGTTCAGTTCTTTCTCCAAGAGGATGAAGGTGCAGAAA
GGAAGCCAGAGAGAACCAGCCCATCTCCCCCTACACAGACGCCCCACCAGGAGGCAGCTCCCCGGGCCAG
CAAAGGGGCACAGACAGGAACTCTGGTGGAGGAGATGGTGGCGGTGGCCAGTGGCACAGCTGGAGGTGAC
GACGGAGGTGCTGCGGGGCGTCCCTTGACCAAAGCCCAGCCTGGACATCGAAGTTACAACCTTCAGGAGC
GAAGACGAATTGGCAGTATGACAGGGGTGGAGCAGGCGCTGTTGCCTAGGGTCCCTACTGATGAAAGTGA
GGCTCAGACACTGGCCACAGCCGACCTTGACCTCATGAAAAGTCACCGATTTGAGGATGTTCCTGGGGTA
CGGCGACACTTGGTGAGGAAGAATGCCAAAGGGTCTACACAGGCTGCCCGGGAAGGTCGAGAGCCTGGCC
CCACACCTCGGGCACGGCCACGGGCCCCGCATAAGCCCCATGAGGTGTTTGTGGAGCTGAATGAGCTGCT
GTTGGACAAAAACCAGGAGCCTCAGTGGCGGGAGACAGCCCGCTGGATAAAATTCGAGGAGGATGTGGAA
GAGGAGACTGAGCGCTGGGGGAAGCCTCATGTGGCCTCACTGTCCTTCCGCAGCCTCCTGGAGCTCCGCA
GGACTCTGGCCCATGGAGCTGTGCTCTTAGACCTCGATCAGCAGACCCTGCCTGGGGTGGCCCATCAGGT
GGTCGAGCAGATGGTCATCTCTGACCAGATCAAGGCAGAGGATAGAGCCAATGTGCTACGGGCCCTCCTG
CTAAAGCACAGCCACCCAAGTGACGAGAAAGAGTTCTCCTTCCCCCGAAACATCTCAGCGGGCTCTCTAG
GCTCTCTACTGGGGCATCACCATGCCCAGGGGACCGAGAGTGATCCTCATGTCACTGAGCCTCTCATTGG
TGGTGTTCCTGAGACCCGACTGGAGGTGGATAGAGAGCGTGAGCTACCACCCCCAGCACCACCTGCAGGT
ATTACCCGCTCCAAGTCCAAGCATGAGCTGAAGCTGCTGGAGAAGATCCCTGAGAATGCGGAGGCTACAG
TGGTCCTCGTGGGCTGTGTGGAGTTCCTCTCCCGCCCTACCATGGCCTTCGTGCGGTTGCGGGAGGCTGT
GGAGCTGGATGCCGTGCTAGAGGTGCCTGTGCCTGTGCGCTTCCTCTTCTTGCTGCTGGGTCCCAGCAGT
GCTAACATGGACTACCATGAGATCGGCCGCTCCATTTCCACCCTCATGTCTGACAAGCAATTTCATGAGG
CAGCCTACCTGGCGGATGAACGAGACGACTTGCTGACTGCTATCAATGCCTTCCTGGACTGCAGTGTTGT
GCTACCGCCTTCTGAAGTGCAGGGCGAGGAGCTGCTGCGTTCTGTTGCCCATTTCCAACGCCAGATGCTA
AAGAAGCGAGAGGAGCAGGGCCGCCTGCTGCCCCCAGGGGCTGGGCTAGAGCCCAAGTCTGCCCAAGATA
AGGCACTCCTGCAGATGGTAGAGGTGGCAGGTGCAGCTGAAGATGATCCCCTTCGGAGGACAGGCCGGCC
CTTTGGGGGGCTGATCCGTGACGTGCGGCGGCGCTACCCCCACTACCTAAGTGACTTCCGCGATGCACTT
GACCCCCAGTGCCTGGCTGCTGTTATTTTCATCTACTTTGCCGCCCTGTCTCCTGCCATCACCTTTGGGG
GGCTACTGGGGGAGAAGACAAAGGACCTGATAGGAGTGTCAGAGCTGATCATGTCCACAGCGCTGCAGGG
AGTGGTCTTCTGCCTGCTGGGGGCTCAGCCCCTGCTGGTCATCGGCTTTTCTGGGCCTCTGCTGGTCTTC
GAGGAGGCCTTCTTCTCGTTCTGCAGTAGCAATGAGTTGGAGTACTTGGTGGGCCGAGTGTGGATTGGCT
TCTGGCTGGTGTTCCTGGCCCTGCTCATGGTGGCTCTGGAGGGGAGCTTCCTGGTCCGCTTTGTATCCCG
ATTCACCCAGGAGATCTTTGCCTTCCTCATATCACTCATCTTCATCTACGAGACCTTCTATAAGCTGATC
AAGATCTTCCAGGAGCACCCACTCCATGGCTGCTCAGGCTCCAACGACTCAGAGGCAGGCAGCAGCAGCA
GCAGCAATATGACATGGGCAACAACCATACTGGTACCAGACAACAGCAGCGCTTCTGGGCAGTCTGGGCA
GGAGAAGCCCCGGGGCCAGCCCAACACAGCTTTGCTATCGCTGGTGCTAATGGCTGGCACTTTCTTCATT
GCCTTCTTCCTGCGCAAGTTCAAGAACAGCCGGTTCTTCCCTGGCCGGATCCGGCGGGTAATTGGGGACT
TTGGGGTGCCCATCGCGATCCTCATCATGGTGCTTGTGGATTACAGTATTGAGGACACCTACACCCAGAA
ACTGAGTGTGCCCAGCGGATTCTCAGTGACAGCCCCAGACAAGCGGGGCTGGGTCATCAACCCCCTTGGA
GAAAAGACCCCCTTCCCTGTGTGGATGATGGTGGCCAGCCTGCTGCCTGCTGTTCTGGTGTTCATCCTCA
TCTTCATGGAGACACAGATCACCACGCTGATCATCTCCAAGAAAGAGAGGATGCTGCAGAAGGGCTCTGG
CTTCCATCTCGACCTGTTGCTCATTGTAGCCATGGGTGGCATCTGTGCCCTCTTTGGCCTGCCTTGGTTG
GCCGCTGCCACTGTCCGCTCTGTCACCCATGCCAATGCACTCACTGTCATGAGCAAGGCTGTGGCACCTG
GGGACAAACCCAAGATTCAGGAAGTCAAGGAACAGCGTGTGACAGGGCTGCTGGTGGCCCTGCTTGTGGG
CCTCTCCATGGTCATTGGGGACCTCCTGCGGCAGATCCCCCTGGCTGTGCTCTTTGGCATTTTCTTGTAC
ATGGGAGTCACCTCCCTCAATGGGATCCAGTTCTACGAGCGGCTGCACCTGCTGCTCATGCCGCCCAAAC
ACCACCCAGATGTCACCTATGTCAAAAAGGTTCGGACCATGCGGATGCACCTGTTCACTGCCTTGCAGTT
GCTCTGCCTGGCCCTGCTTTGGGCAGTCATGTCCACAGCCGCTTCCCTGGCCTTCCCCTTCATCCTCATC
CTCACAGTGCCTTTGCGCATGGTGGTACTTACCCGAATCTTCACTGAGCGAGAAATGAAATGTCTGGATG
CTAATGAGGCAGAGCCAGTGTTTGACGAGTGTGAAGGTGTGGATGAGTACAACGAGATGCCCATGCCTGT
GTAG

Translation (1237 aa):
MSSAPRRPASGADSLHTPEPESLSPGTPGFPEQEEDELRTLGVERFEEILQEAGSRGGEEPGRSYGEEDF
EYHRQSSHHIHHPLSTHLPPDARRRKTPQGPGRKPRRRPGASPTGETPTIEEGEEDEEEASEAEGFRAPP
QQPSPATTPSAVQFFLQEDEGAERKPERTSPSPPTQTPHQEAAPRASKGAQTGTLVEEMVAVASGTAGGD
DGGAAGRPLTKAQPGHRSYNLQERRRIGSMTGVEQALLPRVPTDESEAQTLATADLDLMKSHRFEDVPGV
RRHLVRKNAKGSTQAAREGREPGPTPRARPRAPHKPHEVFVELNELLLDKNQEPQWRETARWIKFEEDVE
EETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVAHQVVEQMVISDQIKAEDRANVLRALL
LKHSHPSDEKEFSFPRNISAGSLGSLLGHHHAQGTESDPHVTEPLIGGVPETRLEVDRERELPPPAPPAG
ITRSKSKHELKLLEKIPENAEATVVLVGCVEFLSRPTMAFVRLREAVELDAVLEVPVPVRFLFLLLGPSS
ANMDYHEIGRSISTLMSDKQFHEAAYLADERDDLLTAINAFLDCSVVLPPSEVQGEELLRSVAHFQRQML
KKREEQGRLLPPGAGLEPKSAQDKALLQMVEVAGAAEDDPLRRTGRPFGGLIRDVRRRYPHYLSDFRDAL
DPQCLAAVIFIYFAALSPAITFGGLLGEKTKDLIGVSELIMSTALQGVVFCLLGAQPLLVIGFSGPLLVF
EEAFFSFCSSNELEYLVGRVWIGFWLVFLALLMVALEGSFLVRFVSRFTQEIFAFLISLIFIYETFYKLI
KIFQEHPLHGCSGSNDSEAGSSSSSNMTWATTILVPDNSSASGQSGQEKPRGQPNTALLSLVLMAGTFFI
AFFLRKFKNSRFFPGRIRRVIGDFGVPIAILIMVLVDYSIEDTYTQKLSVPSGFSVTAPDKRGWVINPLG
EKTPFPVWMMVASLLPAVLVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGICALFGLPWL
AAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLVALLVGLSMVIGDLLRQIPLAVLFGIFLY
MGVTSLNGIQFYERLHLLLMPPKHHPDVTYVKKVRTMRMHLFTALQLLCLALLWAVMSTAASLAFPFILI
LTVPLRMVVLTRIFTEREMKCLDANEAEPVFDECEGVDEYNEMPMPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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