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Report for CCDS52447.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52447.2 Reviewed, update pending Mus musculus 7 Chid1 23 108 98 CCDS HistoryNCBI Gene:68038Re-query CCDS DB by CCDS ID:52447.2Re-query CCDS DB by GeneID:68038See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 52447.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153191.7 ENSMUSP00000114693.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153191.7Link to Ensembl Protein Viewer:ENSMUSP00000114693.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153191Re-query CCDS DB by Protein ID:ENSMUSP00000114693
Original member Current member NCBI NM_001142681.2 NP_001136153.2 Pending alive Link to Nucleotide Sequence:NM_001142681.2Link to Protein Sequence:NP_001136153.2Re-query CCDS DB by Nucleotide ID:NM_001142681Re-query CCDS DB by Protein ID:NP_001136153Link to BLAST:NP_001136153.2
Original member Current member NCBI NM_001369351.1 NP_001356280.1 Accepted alive Link to Nucleotide Sequence:NM_001369351.1Link to Protein Sequence:NP_001356280.1Re-query CCDS DB by Nucleotide ID:NM_001369351Re-query CCDS DB by Protein ID:NP_001356280Link to BLAST:NP_001356280.1
Original member Current member NCBI NM_001369352.1 NP_001356281.1 Accepted alive Link to Nucleotide Sequence:NM_001369352.1Link to Protein Sequence:NP_001356281.1Re-query CCDS DB by Nucleotide ID:NM_001369352Re-query CCDS DB by Protein ID:NP_001356281Link to BLAST:NP_001356281.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136153.2 393 Q922Q9-1 393 100% 0 0
NP_001356280.1 393 Q922Q9-1 393 100% 0 0
NP_001356281.1 393 Q922Q9-1 393 100% 0 0

Chromosomal Locations for CCDS 52447.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141496048 141496146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141496371 141496413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141496601 141496681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141513734 141513889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141515402 141515503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141522609 141522701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141526432 141526493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141527599 141527705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141528463 141528507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141529569 141529701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141530150 141530299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141532819 141532929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGTGGCCACTTCTTCATGTCCTCTGGCTTGCTCTGGTCTGTGGCTCTGTTCACACCACCCTGTCAAAGT
CAGATGCCAAAAAAGCTGCCTCAAAGATGCTGCTGGAAAAGACTCAGTTTTCAGATAAACCTGTCCAAGA
TCGGGGTCTGGTGGTGACGGACATCAAAGCTGAGGATGTGGTTCTTGAACATCGTAGCTACTGCTCATCA
AGGGCTCGGGAGAGAAACTTTGCTGGAGAGGTCCTAGGCTACGTCACTCCATGGAACAGCCATGGCTACG
ATGTTGCCAAGGTCTTTGGGAGCAAGTTCACACAGATCTCACCAGTCTGGTTGCAACTGAAGAGACGTGG
TCGTGAGATGTTTGAAATTACAGGCCTCCATGATGTGGACCAAGGGTGGATGCGAGCTGTCAAGAAGCAT
GCCAAAGGTGTGCGCATAGTGCCTCGACTTCTGTTTGAAGACTGGACTTATGATGATTTCCGAAACGTCT
TAGACAGTGAGGATGAGATAGAAGAGCTCAGCAAGACTGTGGCACAGGTGGCAAAGAACCAGCATTTTGA
CGGTTTTGTGGTGGAGGTCTGGAGCCAGTTGCTGAGCCAGAAACATGTAGGCCTCATTCACATGCTTACT
CACTTGGCTGAGGCGCTGCACCAGGCCAGGCTGCTGGTCATTCTGGTCATCCCACCTGCTGTCACGCCGG
GGACTGACCAGCTGGGCATGTTTACACACAAGGAGTTTGAGCAACTGGCCCCCATACTAGATGGCTTCAG
CCTCATGACATATGACTATTCCACGTCACAACAGCCTGGCCCTAATGCTCCCTTGTCATGGATTCGAGCC
TGTGTCCAGGTCCTAGACCCCAAGTCACAGTGGCGAAGCAAGATCCTCCTGGGCTTGAACTTCTATGGCA
TGGATTATGCAGCCTCCAAGGATGCCCGTGAGCCTGTCATTGGAGCCAGGTACGTACAGACGCTGAAGGA
CCACAGGCCCCGAGTGGTATGGGACAGCCAGGCTGCGGAGCACTTCTTTGAGTACAAGAAGAATCGCGGC
GGGAGGCATGTTGTCTTCTACCCAACTCTGAAGTCTCTGCAGGTGCGGCTGGAGCTAGCCAGGGAGCTTG
GCGTCGGGGTCTCCATCTGGGAGCTGGGCCAAGGCCTGGATTACTTCTATGACCTGCTGTAG

Translation (393 aa):
MWPLLHVLWLALVCGSVHTTLSKSDAKKAASKMLLEKTQFSDKPVQDRGLVVTDIKAEDVVLEHRSYCSS
RARERNFAGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRRGREMFEITGLHDVDQGWMRAVKKH
AKGVRIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVAQVAKNQHFDGFVVEVWSQLLSQKHVGLIHMLT
HLAEALHQARLLVILVIPPAVTPGTDQLGMFTHKEFEQLAPILDGFSLMTYDYSTSQQPGPNAPLSWIRA
CVQVLDPKSQWRSKILLGLNFYGMDYAASKDAREPVIGARYVQTLKDHRPRVVWDSQAAEHFFEYKKNRG
GRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFYDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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