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Report for CCDS19783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19783.1 Public Mus musculus 5 Azgp1 23 108 98 CCDS HistoryNCBI Gene:12007Re-query CCDS DB by CCDS ID:19783.1Re-query CCDS DB by GeneID:12007See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035390.6 ENSMUSP00000038559.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035390.6Link to Ensembl Protein Viewer:ENSMUSP00000038559.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035390Re-query CCDS DB by Protein ID:ENSMUSP00000038559
Original member Current member NCBI NM_013478.2 NP_038506.2 Accepted alive Link to Nucleotide Sequence:NM_013478.2Link to Protein Sequence:NP_038506.2Re-query CCDS DB by Nucleotide ID:NM_013478Re-query CCDS DB by Protein ID:NP_038506Link to BLAST:NP_038506.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038506.2 307 Q64726 307 100% 0 0

Chromosomal Locations for CCDS 19783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137981560 137981620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137985126 137985386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137987439 137987714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137989556 137989881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGTGCCTGTCCTGCTGTCCCTGCCTCTCCTTCTGGGTCCTGCAGTCTTTCAGGAGACTGGGTCTTATT
ATCTGACCTTTCTCTACACCGGGTTGTCCAGACCCAGCAAAGGTTTTCCGAGGTTTCAAGCCACTGCATT
TCTCAATGACCAGGCCTTCTTCCACTACAACAGCAACAGCGGGAAGGCAGAGCCTGTGGGACCTTGGAGC
CAGGTGGAAGGAATGGAGGACTGGGAGAAGGAAAGCCAGCTTCAGAGGGCCAGGGAGGAGATCTTCCTTG
TGACCCTGAAAGACATCATGGACTATTACAAGGACACTACAGGGTCTCACACCTTTCAGGGAATGTTTGG
TTGCGAGATCACAAATAACAGAAGTAGTGGAGCTGTCTGGAGGTATGCCTACGACGGAGAGGATTTCATC
GAATTCAACAAAGAAATCCCAGCTTGGATCCCCTTAGACCCAGCAGCTGCAAACACCAAGCTAAAGTGGG
AAGCAGAAAAGGTCTACGTGCAGCGAGCCAAGGCATACCTAGAGGAGGAGTGTCCTGAAATGCTGAAGAG
GTACCTGAACTACAGTCGATCTCACCTGGACCGAATAGATCCTCCCACTGTGACAATCACCAGCCGTGTG
ATCCCAGGAGGAAACAGAATATTCAAATGCCTGGCCTATGGCTTCTACCCACAAAGAATTAGTCTGCACT
GGAACAAGGCCAACAAGAAGCTAGCATTTGAACCAGAAAGAGGTGTTTTTCCCAATGGAAATGGCACTTA
CCTCTCCTGGGCAGAGGTGGAAGTCTCCCCACAGGACATAGACCCCTTCTTCTGCCTCATAGATCACAGG
GGGTTTTCCCAATCTCTCTCGGTGCAGTGGGATAGGACAAGAAAAGTAAAGGATGAAAACAATGTTGTAG
CTCAGCCTCAGTAA

Translation (307 aa):
MVPVLLSLPLLLGPAVFQETGSYYLTFLYTGLSRPSKGFPRFQATAFLNDQAFFHYNSNSGKAEPVGPWS
QVEGMEDWEKESQLQRAREEIFLVTLKDIMDYYKDTTGSHTFQGMFGCEITNNRSSGAVWRYAYDGEDFI
EFNKEIPAWIPLDPAAANTKLKWEAEKVYVQRAKAYLEEECPEMLKRYLNYSRSHLDRIDPPTVTITSRV
IPGGNRIFKCLAYGFYPQRISLHWNKANKKLAFEPERGVFPNGNGTYLSWAEVEVSPQDIDPFFCLIDHR
GFSQSLSVQWDRTRKVKDENNVVAQPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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