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Report for CCDS48706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48706.1 Public Mus musculus 10 Ppm1h 23 108 98 CCDS HistoryNCBI Gene:319468Re-query CCDS DB by CCDS ID:48706.1Re-query CCDS DB by GeneID:319468See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161487.7 ENSMUSP00000124982.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161487.7Link to Ensembl Protein Viewer:ENSMUSP00000124982.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161487Re-query CCDS DB by Protein ID:ENSMUSP00000124982
Original member Current member NCBI NM_176919.4 NP_795893.2 Accepted alive Link to Nucleotide Sequence:NM_176919.4Link to Protein Sequence:NP_795893.2Re-query CCDS DB by Nucleotide ID:NM_176919Re-query CCDS DB by Protein ID:NP_795893Link to BLAST:NP_795893.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795893.2 469 Q3UYC0-2 469 100% 0 0

Chromosomal Locations for CCDS 48706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 122679186 122679430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122782183 122782345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122802235 122802579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122811447 122811559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122857062 122857146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122878509 122878627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122904092 122904155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122907507 122907614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 122920694 122920861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGCTCACTCGAGTGAAATCTGCCGTGGCCAATTTCATGGGCGGCATCATGGCTGGCAGCTCCGGCTCCG
AGCACGGCGGGAGCGGCTGCGGAGGCTCGGACCTGCCCCTGCGCTTCCCGTACGGGCGGCCGGAGTTCCT
CGGGCTGTCTCAGGATGAGGTGGAGTGCAGCGCAGACCACATCGCCCGCCCCATCCTCATCCTCAAGGAG
ACCCGGCGGCTGCCCTGGGCCACTGGCTACGCAGAGGTTATTAATGCTGGGAAGAGCACACACAATGAGG
ACCAAGCCAGCTGCGAGGTGCTCACAGTGAAGAAGAAAGCCGGAACCATTACTTCCACCCCGAACAGAAA
CTCCAAGAGAAGGTCATCACTTCCCAACGGGGAAGGCCTGCAGTTAAAGGAGAACTCTGAGTCCGAAGGC
ATCTCCTGCCACTACTGGTCCCTGTTTGACGGTCACGCAGGCTCGGGGGCTGCCGTGGTGGCATCGCGCC
TGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCTGAAGAACTCGGCCATCCTTCC
CCCGACCTGCCTGGGGGAGGAGCCAGAGAGCACGCCAGCCCACGGCAGGACCCTAACCCGCGCGGCCTCA
CTGCGTGGAGGTGTGGGTGCCCCGGGCTCCCCCAGTACGCCACCCACGCGCTTCTTCACTGAGAAGAAGA
TCCCGCACGAGTGTCTGGTCATCGGGGCCCTGGAGAGCGCTTTCAAGGAAATGGACCTTCAAATCGAACG
CGAGAGGAGTGCGTATAATATATCTGGCGGCTGCACGGCCCTCATCGTGGTTTGCCTCTTGGGGAAGCTC
TATGTGGCGAATGCTGGCGACAGCAGGGCCATAATCATCAGAAATGGAGAAATCATCCCCATGTCTTCCG
AATTCACCCCTGAGACTGAGCGCCAGAGACTTCAGTACCTGGCGTTCATGCAGCCCCACTTGCTGGGAAA
TGAGTTCACACATTTGGAGTTTCCAAGGAGAGTGCAGAGGAAGGAACTCGGGAAGAAGATGCTGTACCGG
GACTTTAATATGACAGGCTGGGCATACAAAACCATTGAGGATGATGACTTGAAGTTCCCCCTTATATATG
GAGAAGGCAAGAAGGCCCGAGTAATGGCAACTATTGGAGTGACGAGGGGACTTGGGGACCATGACTTAAA
GGTTCATGACTCCAACATCTACATAAAACCATTCCTGTCTTCAGCTCCAGAGGTCAGAGTCTACGATCTC
TCCAGATATGAGCACGGAGCAGATGACGTGCTGATCCTGGCTACTGATGGACTCTGGGATGTCTTATCCA
ACGAAGAAGTAGCGGAAGCAATCACTCAGTTTCTTCCTAACTGTGATCCAGACGACCCTCACAGGTTTGT
GCCTTTATAG

Translation (469 aa):
MLTRVKSAVANFMGGIMAGSSGSEHGGSGCGGSDLPLRFPYGRPEFLGLSQDEVECSADHIARPILILKE
TRRLPWATGYAEVINAGKSTHNEDQASCEVLTVKKKAGTITSTPNRNSKRRSSLPNGEGLQLKENSESEG
ISCHYWSLFDGHAGSGAAVVASRLLQHHITQQLQDIVEILKNSAILPPTCLGEEPESTPAHGRTLTRAAS
LRGGVGAPGSPSTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIERERSAYNISGGCTALIVVCLLGKL
YVANAGDSRAIIIRNGEIIPMSSEFTPETERQRLQYLAFMQPHLLGNEFTHLEFPRRVQRKELGKKMLYR
DFNMTGWAYKTIEDDDLKFPLIYGEGKKARVMATIGVTRGLGDHDLKVHDSNIYIKPFLSSAPEVRVYDL
SRYEHGADDVLILATDGLWDVLSNEEVAEAITQFLPNCDPDDPHRFVPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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