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Report for CCDS15238.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15238.2 Public Mus musculus 1 Ccdc93 23 108 98 CCDS HistoryNCBI Gene:70829Re-query CCDS DB by CCDS ID:15238.2Re-query CCDS DB by GeneID:70829See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15238.1
The coding region has been updated to extend the C-terminus to one that is more supported by available transcript and homology data. The update adds five coiled-coil regions to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15238.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112621.1 ENSMUSP00000108240.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112621.1Link to Ensembl Protein Viewer:ENSMUSP00000108240.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112621Re-query CCDS DB by Protein ID:ENSMUSP00000108240
Original member Current member NCBI NM_029955.3 NP_084231.2 Accepted alive Link to Nucleotide Sequence:NM_029955.3Link to Protein Sequence:NP_084231.2Re-query CCDS DB by Nucleotide ID:NM_029955Re-query CCDS DB by Protein ID:NP_084231Link to BLAST:NP_084231.2

Chromosomal Locations for CCDS 15238.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 121431216 121431257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121434533 121434646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121437796 121437890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121441782 121441893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121445640 121445738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121448224 121448280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121456071 121456171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121461464 121461500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121461887 121461979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121462236 121462283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121463099 121463185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121476032 121476148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121477835 121477897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121480815 121480888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121481996 121482077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121482601 121482666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121483287 121483340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121486603 121486665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121491122 121491230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121492905 121492987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121494396 121494433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121496984 121497068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121499208 121499321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121501190 121501243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGGGGTTACCCAAGGGGCCAGAGGGCCAGGGACTCCCGGAGGTGGAGACGAGAGAAGACGAAGAACAGA
ATGTCAAGCTGACTGAAATCCTGGAGCTCTTGGTCGCAGCTGGCTATTTCAGAGCAAGAATTAAAGGCTT
GTCTCCTTTCGACAAGGTAGTAGGAGGAATGACGTGGTGTATCACCACATGCAGCTTTGATGTGGACGTG
GATTTGCTCTTTCAAGAAAACTCTACAATCGGTCAGAAAATTGCTCTATCGGAAAAGATTGTCTCCGTCC
TCCCAAGGATGAAGTGTCCCCACCAGCTGGAGCCCCACCAGATCCAGGGCATGGATTTTATCCACATATT
CCCTGTCGTGCAGTGGCTGGTGAAACGAGCTATCGAAACAAAGGAAGAGATGGGAGACTACATCCGCTCC
TACTCCATCTCTCAGTTCCAGAAGACCTACAGCCTCCCGGAGGATGATGACTTCATAAAGAGAAAAGACA
AGGCCGTCAAGACGGTCGTTGGCCTCTCGGATGCTTACAAGCCCCGGCGAAAGTACCGACGGCAGCGGGG
AGCAGAGGAGCTGCCAGACGAAGAGTCCCGAGTCCACTCCACACTTCTGGAATATGGCAGGAGATACGGA
TTTAGTCGCCAGAGCAAAACAGAGAAGGCTGAGGACAAGAAAACAGCACTTGCTGCAGGGCTGTCAGCTG
CAGAGAAAGTGGATGCTCACGAGGAAGATGAGCTTCAGGCAGCCGAAGAGCGTATTCAGTCACTGATGAC
CAAGATGACCGCCATGGCAAACGAGGAGAGCCGTCTCACCGCAAGCTCCGTGGGCCAGATCGTGGGTCTC
TGCTCTGAGGAGATCAAGCAGATTGTGTCTGAGTACGCAGGGAAGCAGTCTGAGCTGTCCGCTGAAGAAA
GTCCAGAGAAGTTAGGAACCTCCCAGCTGCATCAGCGGAAAGTCATTTCCTTGAATAAGCAGATTCTGCA
GAAGAGCAAACATCTGGAAGAGCTGCAAGCGAATCATACCAGCCTCAAAGCCAAGTACAGCGACAGGAAG
AAGACACTGACAGAGTTGAAGGATCATGGTGAGAAACTAGACAAAGAGCAGGCAGCCCTGGAGAAATTAG
AAGCCAAAGCCGACCCAAGCATGCTGCAGAACCTGAGAGCACTTGTAGCCATGAATGAAAGTCTGAAAAG
CCAGGAGCAGGAGTTTAAGGCACACTGCCGGGAGGAGATGGCTCGGCTACAACAGGAAATTGAGACCCTG
AAAGCTGAGAGAGCACCAGGTGAGAAGATCATCTCTGGTGGAGAGCCGCAGGGTGCCCTGACCTCCACCA
TGACTCACAATGAGGACCTGGACAGACGGTACAACATGGAAAAAGAGAAGCTGTACAAGATCCGGTTACT
ACAGGCACGAAGAAATCGAGAAATAGCAATTTTGCATCGCAAGATTGACGAAGTGCCCAGTCGAGCAGAG
CTGATACAGTATCAGAAGCGATTTATTGAACTCTACCGTCAGATTTCCGCAGTGCACAAGGAAACCAAGC
AGTTCTTCACTTTGTACAATACCCTGGATGACAAAAAGGTTTACCTGGAGAAGGAGATTAGCCTGCTGAA
CTCTATTCACGAGAACTTCTCACAAGCCATGGCCTCCCCTGCTGCCCGGGACCAGTTTTTAAGGCAGATG
GAACAGATCGTCGAAGGCATTAAACAAAGCAGGATGAAGATGGAAAAGAAGAAGCAGGAGAACAAGATGA
GGAGGGACCAGTTGAACGATCAGTACTTGGAGCTCCTGGAAAAGCAGAGGCTCTACTTCAAGACTGTGAA
AGAGTTCAAAGAGGAGGGCCGAAAGAATGAGCTATTACTATCTAAGATCAAAGCCAAGGCCTCCTGA

Translation (628 aa):
MGLPKGPEGQGLPEVETREDEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWCITTCSFDVDV
DLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVVQWLVKRAIETKEEMGDYIRS
YSISQFQKTYSLPEDDDFIKRKDKAVKTVVGLSDAYKPRRKYRRQRGAEELPDEESRVHSTLLEYGRRYG
FSRQSKTEKAEDKKTALAAGLSAAEKVDAHEEDELQAAEERIQSLMTKMTAMANEESRLTASSVGQIVGL
CSEEIKQIVSEYAGKQSELSAEESPEKLGTSQLHQRKVISLNKQILQKSKHLEELQANHTSLKAKYSDRK
KTLTELKDHGEKLDKEQAALEKLEAKADPSMLQNLRALVAMNESLKSQEQEFKAHCREEMARLQQEIETL
KAERAPGEKIISGGEPQGALTSTMTHNEDLDRRYNMEKEKLYKIRLLQARRNREIAILHRKIDEVPSRAE
LIQYQKRFIELYRQISAVHKETKQFFTLYNTLDDKKVYLEKEISLLNSIHENFSQAMASPAARDQFLRQM
EQIVEGIKQSRMKMEKKKQENKMRRDQLNDQYLELLEKQRLYFKTVKEFKEEGRKNELLLSKIKAKAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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