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Report for CCDS24633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24633.1 Public Mus musculus 11 Canx 23 108 98 CCDS HistoryNCBI Gene:12330Re-query CCDS DB by CCDS ID:24633.1Re-query CCDS DB by GeneID:12330See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24633.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020637.8 ENSMUSP00000020637.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020637.8Link to Ensembl Protein Viewer:ENSMUSP00000020637.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020637Re-query CCDS DB by Protein ID:ENSMUSP00000020637
Original member Current member EBI ENSMUST00000179865.7 ENSMUSP00000137440.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179865.7Link to Ensembl Protein Viewer:ENSMUSP00000137440.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179865Re-query CCDS DB by Protein ID:ENSMUSP00000137440
Original member Current member NCBI NM_001110499.1 NP_001103969.1 Accepted alive Link to Nucleotide Sequence:NM_001110499.1Link to Protein Sequence:NP_001103969.1Re-query CCDS DB by Nucleotide ID:NM_001110499Re-query CCDS DB by Protein ID:NP_001103969Link to BLAST:NP_001103969.1
Original member Current member NCBI NM_001110500.1 NP_001103970.1 Accepted alive Link to Nucleotide Sequence:NM_001110500.1Link to Protein Sequence:NP_001103970.1Re-query CCDS DB by Nucleotide ID:NM_001110500Re-query CCDS DB by Protein ID:NP_001103970Link to BLAST:NP_001103970.1
Original member Current member NCBI NM_007597.3 NP_031623.1 Accepted alive Link to Nucleotide Sequence:NM_007597.3Link to Protein Sequence:NP_031623.1Re-query CCDS DB by Nucleotide ID:NM_007597Re-query CCDS DB by Protein ID:NP_031623Link to BLAST:NP_031623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103969.1 591 P35564 591 100% 0 0
NP_001103970.1 591 P35564 591 100% 0 0
NP_031623.1 591 P35564 591 100% 0 0

Chromosomal Locations for CCDS 24633.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50296282 50296335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50297058 50297137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50297274 50297394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50298117 50298236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50299129 50299344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50300898 50301054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50301758 50301871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50304326 50304515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50307470 50307662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50308310 50308391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50308788 50308929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50310372 50310430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50310794 50310867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50311604 50311777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGGAAGGGAAGTGGTTACTGTGTTTGCTGCTGGTCCTTGGAACTGCAGCTGTTGAGGCTCATGATGGAC
ATGATGATGACGCGATTGATATTGAAGATGATCTTGATGATGTTATTGAAGAGGTAGAAGATTCAAAATC
TAAATCAGATGCCAGCACTCCTCCATCTCCAAAGGTCACCTACAAAGCTCCAGTTCCAACAGGGGAGGTT
TATTTTGCTGACTCCTTTGACAGAGGGTCTCTGTCAGGGTGGATTTTATCTAAAGCCAAAAAAGATGACA
CTGATGATGAAATTGCCAAATATGATGGAAAGTGGGAAGTAGATGAGATGAAGGAAACAAAGCTTCCAGG
GGATAAAGGACTTGTACTGATGTCTCGGGCCAAGCATCATGCCATCTCTGCTAAACTGAATAAGCCCTTC
CTGTTTGATACCAAGCCTCTCATTGTTCAGTATGAGGTTAATTTTCAGAATGGAATAGAATGTGGTGGTG
CCTATGTGAAGCTGCTTTCCAAGACGGCAGAGCTCAGCCTGGATCAATTCCACGACAAGACTCCCTATAC
TATTATGTTTGGTCCAGATAAGTGTGGAGAGGACTACAAACTGCATTTCATCTTTCGACACAAAAATCCC
AAGACAGGTGTATATGAAGAAAAACATGCTAAGAGGCCAGATGCAGATCTGAAGACCTATTTCACTGACA
AGAAAACGCATCTTTATACATTAATCTTGAATCCAGACAATAGTTTTGAAATATTAGTTGACCAGTCTGT
TGTGAACAGTGGAAATCTGCTAAATGACATGACTCCTCCTGTAAACCCTTCACGTGAAATTGAAGACCCA
GAAGACCGGAAGCCTGAAGATTGGGATGAAAGGCCCAAAATAGCAGATCCAGATGCTGTCAAGCCAGATG
ACTGGGATGAAGACGCCCCTTCTAAGATCCCAGATGAAGAGGCCACCAAGCCTGAAGGCTGGCTAGACGA
CGAACCTGAGTATATTCCAGACCCTGATGCAGAGAAGCCAGAGGATTGGGATGAGGATATGGACGGAGAA
TGGGAGGCTCCTCAGATTGCCAACCCCAAGTGTGAGTCAGCCCCTGGGTGTGGTGTCTGGCAGCGACCTA
TGATTGACAACCCCAATTATAAGGGCAAATGGAAGCCTCCAATGATTGACAACCCTAACTACCAGGGAAT
CTGGAAACCAAGGAAAATACCAAATCCAGATTTCTTTGAAGACCTAGAACCTTTTAAGATGACTCCTTTC
AGTGCTATTGGTTTGGAGCTCTGGTCCATGACATCCGACATCTTTTTTGACAACTTTATCATTAGTGGTG
ACCGAAGAGTAGTTGATGATTGGGCCAATGATGGGTGGGGCCTGAAGAAAGCTGCTGATGGGGCTGCTGA
GCCAGGTGTAGTGCTGCAGATGCTGGAGGCAGCTGAAGAGCGTCCATGGCTTTGGGTGGTCTACATTTTG
ACTGTAGCTTTGCCAGTGTTCCTTGTGATCCTCTTCTGCTGTTCTGGAAAGAAACAGTCCAATGCTATGG
AGTACAAGAAGACGGATGCTCCCCAGCCAGATGTGAAGGATGAAGAAGGGAAGGAAGAAGAGAAGAACAA
GAGGGATGAAGAGGAAGAAGAGGAGAAGCTTGAAGAGAAACAGAAGAGTGATGCTGAAGAAGATGGTGTT
ACTGGCAGTCAAGATGAGGAAGATAGCAAGCCTAAAGCAGAGGAGGATGAAATTTTGAACAGATCGCCAA
GAAACAGAAAGCCACGAAGAGAGTGA

Translation (591 aa):
MEGKWLLCLLLVLGTAAVEAHDGHDDDAIDIEDDLDDVIEEVEDSKSKSDASTPPSPKVTYKAPVPTGEV
YFADSFDRGSLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPF
LFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTAELSLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNP
KTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDP
EDRKPEDWDERPKIADPDAVKPDDWDEDAPSKIPDEEATKPEGWLDDEPEYIPDPDAEKPEDWDEDMDGE
WEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPF
SAIGLELWSMTSDIFFDNFIISGDRRVVDDWANDGWGLKKAADGAAEPGVVLQMLEAAEERPWLWVVYIL
TVALPVFLVILFCCSGKKQSNAMEYKKTDAPQPDVKDEEGKEEEKNKRDEEEEEEKLEEKQKSDAEEDGV
TGSQDEEDSKPKAEEDEILNRSPRNRKPRRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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