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Report for CCDS18822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18822.1 Public Mus musculus 4 Ece1 23 108 98 CCDS HistoryNCBI Gene:230857Re-query CCDS DB by CCDS ID:18822.1Re-query CCDS DB by GeneID:230857See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102518.9 ENSMUSP00000099576.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102518.9Link to Ensembl Protein Viewer:ENSMUSP00000099576.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102518Re-query CCDS DB by Protein ID:ENSMUSP00000099576
Original member Current member NCBI NM_001369179.1 NP_001356108.1 Accepted alive Link to Nucleotide Sequence:NM_001369179.1Link to Protein Sequence:NP_001356108.1Re-query CCDS DB by Nucleotide ID:NM_001369179Re-query CCDS DB by Protein ID:NP_001356108Link to BLAST:NP_001356108.1
Original member Current member NCBI NM_199307.2 NP_955011.1 Accepted alive Link to Nucleotide Sequence:NM_199307.2Link to Protein Sequence:NP_955011.1Re-query CCDS DB by Nucleotide ID:NM_199307Re-query CCDS DB by Protein ID:NP_955011Link to BLAST:NP_955011.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356108.1 753 Q4PZA2-3 753 100% 0 0
NP_955011.1 753 Q4PZA2-3 753 100% 0 0

Chromosomal Locations for CCDS 18822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 137913768 137913854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137921021 137921162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137926219 137926431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137935261 137935382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137936658 137936804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137937339 137937404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137938624 137938815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137945017 137945159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137946255 137946369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137948544 137948654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137949447 137949545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137950156 137950233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137951498 137951601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137956458 137956568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137957135 137957202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137957999 137958189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137961643 137961738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137962730 137962906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2262 nt):
ATGTCAACCTACAAGCGGGCCACGCTGGACGAAGAGGATCTGGTGGACTCACTCTCCGAGGGCGATGTGT
ACCCCAATGGCCTACAGGTGAACTTCCGCAGCTCCCGGAGCGGCCAGAGGTGCTGGGCAGCTCGGACCTC
GGTGGAGAAGCGGCTGGTGGTGCTGGTGACGCTTCTGGCGGCAGGGTTGGTGGCCTGCCTGGCAGCCCTG
GGCATCCAGTACCAGACAAGAACGCCTCCGGTATGTCTGACGGAGGCCTGTGTCTCAGTGACCAGCTCTA
TCCTAAACTCCATGGACCCCACAGTAGACCCGTGCCAGGACTTCTTCAGCTACGCCTGCGGGGGCTGGAT
CAAGGCCAACCCCGTGCCCGATGGCCACTCACGCTGGGGAACCTTCAGCAACCTCTGGGAACACAACCAA
GCTGTCATCAAGCATCTACTGGAAAATGCCACGGCCAGTGTGAGCGAGGCAGAGAGAAAAGCCCAAGTGT
ACTACCGTGCGTGCATGAACGAAACTAGGATTGAGGAGCTTCGGGCCAAGCCCCTGATGGAGCTGATTGA
GAAGCTGGGAGGCTGGAATATCACAGGACCCTGGGCCAAGGACAACTTCCAGGACACACTGCAGGTGGTC
ACAGCTCACTACCGCACCTCACCCTTCTTCTCTGTTTATGTCAGCGCGGACTCCAAGAATTCCAACAGCA
ATGTGATCCAGGTGGACCAGTCCGGCCTTGGCTTGCCCTCCAGAGACTATTACCTGAACAAGACAGAGAA
TGAAAAGGTCCTGACTGGATACCTGAACTACATGGTCCAGCTGGGGAAGCTCCTGGGCGGTGGGGACGAG
GATGCCATCCGGCCACAGATGCAGCAGATCCTGGATTTTGAGACGGCGCTGGCCAACATCACCATCCCCC
AGGAGAAGCGCAGGGATGAAGAACTCATCTACCACAAAGTCACGGCTGCCGAGCTGCAGACCTTGGCACC
TGCCATCAACTGGTTACCCTTTCTGAACACCATTTTTTACCCAGTGGAGATCAATGAGTCTGAGCCAATC
GTGGTCTACGACAAGGAATACTTGAGACAAGTCTCCACCCTCATCAACAACACCGACAAATGTCTGCTCA
ACAACTACATGATGTGGAACCTGGTACGCAAAACAAGCTCCTTCCTGGACCAGCGCTTTCAGGACGCCGA
CGAGAAGTTCATGGAGGTTATGTATGGGACGAAGAAGACCTGTATTCCCCGCTGGAAGTTTTGTGTGAGT
GACACGGAAAACAACCTGGGCTTTGCCCTGGGACCCATGTTTGTGAAAGCAACCTTTGCAGAAGACAGTA
AGAATATAGCCAGTGAGATCATCATGGAGATCAAGAAGGCGTTTGAGGAGAGTCTGAGCACTCTGAAATG
GATGGATGAAGAGACTCGGAGATCAGCCAAGGAGAAGGCGGATGCTATCTACAACATGATAGGCTACCCC
AACTTCATCATGGACCCCAAGGAGCTGGACAAAGTCTTCAATGACTACACAGCAGTTCCTGATCTCTACT
TTGAGAACGCCATGCGCTTTTTCAACTTCTCATGGAGGGTCACAGCTGACCAGCTCAGAAAAGCTCCCAA
CAGAGATCAGTGGAGTATGACGCCGCCCATGGTGAACGCTTACTACTCGCCCACCAAGAACGAGATCGTG
TTTCCAGCTGGAATACTGCAGGCGCCATTTTATACCCGCTCTTCACCCAACGCCTTGAACTTCGGTGGCA
TTGGTGTCGTAGTGGGCCACGAGCTGACTCACGCTTTCGATGATCAAGGTCGGGAGTACGACAAGGATGG
GAACCTTCGACCCTGGTGGAAGAACTCGTCCGTGGAGGCGTTCAAGCAGCAGACGGAGTGCATGGTGCAG
CAATACAGCAACTACAGCGTGAACGGGGAGCCCGTGAACGGTCGACACACCCTCGGGGAGAACATTGCCG
ACAACGGGGGACTCAAGGCGGCCTACCGGGCGTACCAGAACTGGGTAAAGAAGAACGGAGCTGAGCAGAC
GCTGCCCACCCTGGGTCTCACCAGCAACCAGCTCTTCTTCCTAGGATTTGCACAGGTCTGGTGCTCTGTC
CGCACACCTGAGAGCTCCCACGAAGGCCTCATCACGGATCCGCACAGCCCCTCTCGCTTCCGGGTCATCG
GCTCGCTCTCCAACTCCAAGGAGTTCTCAGAACACTTTCGCTGCCCGCCTGGCTCTCCCATGAACCCTCA
TCACAAGTGCGAAGTCTGGTAA

Translation (753 aa):
MSTYKRATLDEEDLVDSLSEGDVYPNGLQVNFRSSRSGQRCWAARTSVEKRLVVLVTLLAAGLVACLAAL
GIQYQTRTPPVCLTEACVSVTSSILNSMDPTVDPCQDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQ
AVIKHLLENATASVSEAERKAQVYYRACMNETRIEELRAKPLMELIEKLGGWNITGPWAKDNFQDTLQVV
TAHYRTSPFFSVYVSADSKNSNSNVIQVDQSGLGLPSRDYYLNKTENEKVLTGYLNYMVQLGKLLGGGDE
DAIRPQMQQILDFETALANITIPQEKRRDEELIYHKVTAAELQTLAPAINWLPFLNTIFYPVEINESEPI
VVYDKEYLRQVSTLINNTDKCLLNNYMMWNLVRKTSSFLDQRFQDADEKFMEVMYGTKKTCIPRWKFCVS
DTENNLGFALGPMFVKATFAEDSKNIASEIIMEIKKAFEESLSTLKWMDEETRRSAKEKADAIYNMIGYP
NFIMDPKELDKVFNDYTAVPDLYFENAMRFFNFSWRVTADQLRKAPNRDQWSMTPPMVNAYYSPTKNEIV
FPAGILQAPFYTRSSPNALNFGGIGVVVGHELTHAFDDQGREYDKDGNLRPWWKNSSVEAFKQQTECMVQ
QYSNYSVNGEPVNGRHTLGENIADNGGLKAAYRAYQNWVKKNGAEQTLPTLGLTSNQLFFLGFAQVWCSV
RTPESSHEGLITDPHSPSRFRVIGSLSNSKEFSEHFRCPPGSPMNPHHKCEVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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