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Report for CCDS24595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24595.1 Public Mus musculus 11 Ifi47 23 108 98 CCDS HistoryNCBI Gene:15953Re-query CCDS DB by CCDS ID:24595.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046704.6 ENSMUSP00000041975.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046704.6Link to Ensembl Protein Viewer:ENSMUSP00000041975.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046704Re-query CCDS DB by Protein ID:ENSMUSP00000041975
Original member Current member EBI ENSMUST00000109202.2 ENSMUSP00000104825.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109202.2Link to Ensembl Protein Viewer:ENSMUSP00000104825.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109202Re-query CCDS DB by Protein ID:ENSMUSP00000104825
Original member Current member EBI ENSMUST00000213728.1 ENSMUSP00000150940.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213728.1Link to Ensembl Protein Viewer:ENSMUSP00000150940.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213728Re-query CCDS DB by Protein ID:ENSMUSP00000150940
Original member Current member NCBI NM_001271676.1 NP_001258605.1 Accepted alive Link to Nucleotide Sequence:NM_001271676.1Link to Protein Sequence:NP_001258605.1Re-query CCDS DB by Nucleotide ID:NM_001271676Re-query CCDS DB by Protein ID:NP_001258605Link to BLAST:NP_001258605.1
Original member Current member NCBI NM_001271677.1 NP_001258606.1 Accepted alive Link to Nucleotide Sequence:NM_001271677.1Link to Protein Sequence:NP_001258606.1Re-query CCDS DB by Nucleotide ID:NM_001271677Re-query CCDS DB by Protein ID:NP_001258606Link to BLAST:NP_001258606.1
Original member Current member NCBI NM_008330.2 NP_032356.1 Accepted alive Link to Nucleotide Sequence:NM_008330.2Link to Protein Sequence:NP_032356.1Re-query CCDS DB by Nucleotide ID:NM_008330Re-query CCDS DB by Protein ID:NP_032356Link to BLAST:NP_032356.1

Chromosomal Locations for CCDS 24595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49095408 49096670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGATCAGTTCATCTCAGCCTTCCTGAAGGGTGCTTCAGAAAATAGTTTCCAACAATTAGCTAAGGAGT
TTCTGCCTCAGTACTCTGCATTAATCAGTAAGGCAGGAGGCATGCTCTCTCCAGAAACCCTCACTGGTAT
TCACAAAGCCCTCCAGGAGGGAAATCTCTCTGATGTCATGATCCAGATTCAGAAAGCAATTAGTGCTGCA
GAGAATGCTATCCTGGAGGTGGCTGTGATCGGGCAGTCTGGGACTGGCAAGTCCAGTTTTATAAATGCCC
TTCGAGGGCTGGGCCACGAAGCAGATGAATCCGCTGATGTTGGGACTGTGGAGACCACTATGTGTAAAAC
CCCCTATCAACATCCAAAATATCCCAAAGTGATCTTCTGGGACCTGCCTGGGACTGGGACACCCAATTTC
CACGCAGACGCTTATCTAGACCAAGTGGGATTTGCCAACTATGACTTCTTCATCATCATTTCTTCTTCCC
GCTTCAGCCTCAATGATGCTCTCCTGGCTCAGAAAATAAAGGATGCTGGGAAGAAGTTCTACTTTGTTAG
AACCAAGGTGGATAGTGACTTATATAATGAACAGAAAGCCAAACCCATAGCTTTCAAGAAGGAGAAAGTC
CTTCAGCAGATTCGAGACTACTGTGTGACTAATCTCATCAAAACTGGGGTGACTGAACCATGCATCTTCC
TGATCTCCAACTTGGATCTGGGTGCGTTTGATTTCCCCAAGCTGGAGGAGACTCTGCTAAAGGAGCTCCC
TGGGCACAAGCGTCATATGTTTGCCCTGCTCTTGCCCAATATCTCGGATGCTTCCATTGAGCTAAAGAAA
CATTTTCTTCGGGAGAAGATCTGGCTGGAGGCCTTGAAGTCAGCAGCTGTGAGCTTCATCCCCTTCATGA
CTTTCTTTAAGGGCTTTGATTTGCCTGAACAAGAACAGTGCTTGAAGGATTACCGAAGCTATTTTGGCTT
GGATGATCAATCGATTAAAGAGATTGCTGAAAAATTGGGCGCACCCTTGGCAGACATCAAGGGGGAACTT
AAGTGCTTGGATTTCTGGTCCCTTGTAAAGGATAACAGCATAATAGCGCAAGCTACGAGTGCTGCTGAAG
CTTTTTGTGCTGTGAAAGGAGGCCCTGAATCTTCTGCCTTCCAGGCTTTAAAAGTCTATTATAGGCGCAC
ACAGTTCCTTAACATAGTGGTTGACGATGCTAAACATCTCTTGAGAAAGATAGAAACAGTAAATGTTGCC
TAG

Translation (420 aa):
MDQFISAFLKGASENSFQQLAKEFLPQYSALISKAGGMLSPETLTGIHKALQEGNLSDVMIQIQKAISAA
ENAILEVAVIGQSGTGKSSFINALRGLGHEADESADVGTVETTMCKTPYQHPKYPKVIFWDLPGTGTPNF
HADAYLDQVGFANYDFFIIISSSRFSLNDALLAQKIKDAGKKFYFVRTKVDSDLYNEQKAKPIAFKKEKV
LQQIRDYCVTNLIKTGVTEPCIFLISNLDLGAFDFPKLEETLLKELPGHKRHMFALLLPNISDASIELKK
HFLREKIWLEALKSAAVSFIPFMTFFKGFDLPEQEQCLKDYRSYFGLDDQSIKEIAEKLGAPLADIKGEL
KCLDFWSLVKDNSIIAQATSAAEAFCAVKGGPESSAFQALKVYYRRTQFLNIVVDDAKHLLRKIETVNVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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