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Report for CCDS51250.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51250.2 Reviewed, update pending Mus musculus 4 Fyb2 23 108 98 CCDS HistoryNCBI Gene:242594Re-query CCDS DB by CCDS ID:51250.2Re-query CCDS DB by GeneID:242594See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 51250.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106804.1 ENSMUSP00000102416.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106804.1Link to Ensembl Protein Viewer:ENSMUSP00000102416.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106804Re-query CCDS DB by Protein ID:ENSMUSP00000102416
Original member Current member NCBI NM_001162980.2 NP_001156452.2 Pending alive Link to Nucleotide Sequence:NM_001162980.2Link to Protein Sequence:NP_001156452.2Re-query CCDS DB by Nucleotide ID:NM_001162980Re-query CCDS DB by Protein ID:NP_001156452Link to BLAST:NP_001156452.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156452.2 729 A2A995 729 100% 0 0

Chromosomal Locations for CCDS 51250.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 104913682 104913690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104945104 104945851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104948674 104948832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104950853 104950886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104978986 104979086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104986256 104986290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104988150 104988181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104988964 104989066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104990198 104990357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104995698 104995812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104995901 104995941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104999326 104999389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105000421 105000519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105002122 105002153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105003873 105003945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105010451 105010537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105013288 105013381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105015610 105015766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105015852 105015885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105016131 105016143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGGAGGAGGAAGGGATAAGAAACTTCAAGGAACTTCGAGCCAAATTTCAAAAGTTCAATGCTGCACCTC
TTCCAGGGCCAATGAGGTTTCCAGCTGGCGTGTCTCGAAAGCATGACAGAGGTTCCACACAGCCAGCTCA
GGATCTGGCTAATAGGAAGTGCCTCTCATCCCACCATCATCAAACCCCGTCTCATTCTTCCACTGGAGTG
TCCCAGCCTCTTAAAAACCAGACATTGAAGTCGGCTCAGGGAGATGAACTTCAGAAGACTTCAAGTTCCT
CGGGAACTCCAGAAAAATCTACAGTGTGTCCTGAAAGGGATTTCCAGAAAGCTGCCGTGCCATTGGATGT
GACTAAATCAAGAGCTAAGACATCCAACGAGGAGAAAGGAATGACTCTCAGTAGCTTCAGATACAAGCTT
TGGAACTGGGAGAAAGTTTCATCTCAGAATGGTGAAATGTCCCCAGCTCCACTCCTTACCAATGGCGGGA
TTAAGACCTTCCACTTTGAAGGGCAGAAAACCATGGGGCTTGCTCAGGACAAACCAGAGAAGAGCCTGAA
GGCAACAGGAGCCCAGACTCTTCCTCCCCAGAGCCATTCGATGGCCCAGAGAAAATCACCCGTGACCTCC
AAAGCCTCCAGTGTATCACTTCCTCCACATAGCAGGAAGAGCACAAAAAGCCCTGCCACTGAGGGAAGCC
ACAGGAGCAGCCAATGCCAGCCTGTTTATGAGTGTGAACTTGACAGCCTGGTTCCAGAGAAGCCACAGAG
CAGGCACTGCCGGCTTCCCAAAACAAAACCACTGCCTTCCATTGAGACCCTCGGTCCACCTCCTCCGAAG
CCTTCAAAGCCCCCATTCGTGAACCTCTATGCCTTCCACAGGCTGCCAGCTACTGTCACCAAGACCCCGA
AAGAAGAGACTATGAAGGAGGGTCCCCTGTCTCCAGATAGTGCAGAGTTGGAAGAAGCACATAATTATGA
CACGACAATTTCGTATCTGAGACACTCTGGCAACTCCATTAACTTGTGTGCTGAGGGAGAAAGTACTGAA
GCCACTTATGAAATTGAGATTGAAGAACTCCAAAAGCCTTGGAGGAGTTTTTTCCTTCCAGAACTGAGTC
CTAGACCTAAAGAGGAAGAAAACACCATGGAGGAAAAGGAGTCGTGGGAATCGGAACCTCTGGAGCCAAG
GAAGGAGTTACACCCTAGTCGTCCTCCCAAGGTAGTTGTCTACAAAGAGACTCCAGGAAAAACCCAGATG
GCTGGAGTCCATGAGGACAGAAGGAGTGTGCCAGCTGGAAACCAGGAAGCCATGACTGACATCATGCAGA
ACAGGCTCTTCCCCGAGGATGTGACGCTGACGAGGCATTCCCAGGATAAGAGTGGGTACGTGGAGGCTTT
GGAGGTGACGAAAGAAACGCCAAGTCCCAGCACCATTAGGTCAAGCTCCTCTTCAGAGAAGACTTATGAT
GCCGTGGAGTGCTCCAGAGAAGACGTACGAAAGTGGGACTTCTCCAGCTCATTCACCTCAGACAGTGAAG
AAAATTGTGAAGAAATGTATGAAGATATCTACAAAGCAAAGAACGATGATCCTAAAACAGAAGTAGCTGG
GAGGACAGCACTGAGAAAACTGCAGCAGATCTTCAGGAAAGAAAACGTCGTGTTCAGAATGAAGAAAACC
AAGTCAAAAGAAATTGTCAGCAATGGATTTTCCGTGTCACTGCCTGACTTGGGACCTAGGTCTCAGGATG
ATTCTCAGGATGGTATCATCTACGATGATGTGGATACACGTGAGAAAGAATCAAACGATGAGGATAAAGT
AAAAACTTGGAAGACTAAGTTTTTGATACCAAAAGGAAAAAAGTGGGGGAAAGGAAGCCAGGGATCCAAA
AGTTTTTCTCCCAGACATTTCTTCAGAACTAAGAAGCAAAAATTAGAAAAGAATAGAATGGAAAAAGAAG
AAAAACTCTTCAGAGAACGATTTCAGTATGGTAAAGAAATCCTGGTCATTAACAGAGCTGTAGCGTGTGC
CAGTAATTCACGAAATGGAATGTTTGATCTGCCAATAATTCCTGGCGAACAGCTGGAAGTCATCGACACC
ACTGAGCAAAACCTAGTGATCTGTCGCAATTCCAAAGGCAAATATGGATATGTGCTCGTTGAACATCTAG
ATTTCAAGCATCAGGGCTGA

Translation (729 aa):
MEEEGIRNFKELRAKFQKFNAAPLPGPMRFPAGVSRKHDRGSTQPAQDLANRKCLSSHHHQTPSHSSTGV
SQPLKNQTLKSAQGDELQKTSSSSGTPEKSTVCPERDFQKAAVPLDVTKSRAKTSNEEKGMTLSSFRYKL
WNWEKVSSQNGEMSPAPLLTNGGIKTFHFEGQKTMGLAQDKPEKSLKATGAQTLPPQSHSMAQRKSPVTS
KASSVSLPPHSRKSTKSPATEGSHRSSQCQPVYECELDSLVPEKPQSRHCRLPKTKPLPSIETLGPPPPK
PSKPPFVNLYAFHRLPATVTKTPKEETMKEGPLSPDSAELEEAHNYDTTISYLRHSGNSINLCAEGESTE
ATYEIEIEELQKPWRSFFLPELSPRPKEEENTMEEKESWESEPLEPRKELHPSRPPKVVVYKETPGKTQM
AGVHEDRRSVPAGNQEAMTDIMQNRLFPEDVTLTRHSQDKSGYVEALEVTKETPSPSTIRSSSSSEKTYD
AVECSREDVRKWDFSSSFTSDSEENCEEMYEDIYKAKNDDPKTEVAGRTALRKLQQIFRKENVVFRMKKT
KSKEIVSNGFSVSLPDLGPRSQDDSQDGIIYDDVDTREKESNDEDKVKTWKTKFLIPKGKKWGKGSQGSK
SFSPRHFFRTKKQKLEKNRMEKEEKLFRERFQYGKEILVINRAVACASNSRNGMFDLPIIPGEQLEVIDT
TEQNLVICRNSKGKYGYVLVEHLDFKHQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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