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Report for CCDS15133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15133.1 Public Mus musculus 1 Gigyf2 23 108 98 CCDS HistoryNCBI Gene:227331Re-query CCDS DB by CCDS ID:15133.1Re-query CCDS DB by GeneID:227331See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027475.14 ENSMUSP00000027475.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027475.14Link to Ensembl Protein Viewer:ENSMUSP00000027475.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027475Re-query CCDS DB by Protein ID:ENSMUSP00000027475
Original member Current member EBI ENSMUST00000174501.7 ENSMUSP00000133327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174501.7Link to Ensembl Protein Viewer:ENSMUSP00000133327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174501Re-query CCDS DB by Protein ID:ENSMUSP00000133327
Original member Current member NCBI NM_146112.4 NP_666224.3 Accepted alive Link to Nucleotide Sequence:NM_146112.4Link to Protein Sequence:NP_666224.3Re-query CCDS DB by Nucleotide ID:NM_146112Re-query CCDS DB by Protein ID:NP_666224Link to BLAST:NP_666224.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666224.3 1291 Q6Y7W8-1 1291 100% 0 0

Chromosomal Locations for CCDS 15133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87354446 87354486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87364104 87364233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87365184 87365279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87373997 87374111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87378972 87379083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87379968 87380008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87403667 87403846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87406984 87407201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87407293 87407455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87407535 87407723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87410662 87410858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87411708 87411867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87416818 87416984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87419088 87419179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87420285 87420392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87421491 87421591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87423181 87423281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87425065 87425226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87428570 87428728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87433680 87433916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87436769 87436891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87440388 87440612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87440717 87440922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87442011 87442165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87443645 87443826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87446312 87446459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87449078 87449145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3876 nt):
ATGGCAGCAGAAACACAGACACTAAACTTTGGGCCTGAATGGCTCCGTGCTCTGTCCAGTGGTGGGAGTA
TCACGTCCCCTCCTCTTTCTCCGGCCCTGCCAAAGTATAAATTAGCAGATTATCGATATGGCCGAGAAGA
AATGTTAGCACTTTTCCTTAAAGACTACAAGATACCCTTTGATCTTCTGGAGAAAGAATTCCTGCCTATC
CTACAGGAGGAGCCCTTGCCACCATTGGCTCTAGTACCCTTTACAGAAGAAGAGCAGAGAAACTTTTCCA
TGTCTGTAAATAGTGCCGCTGTCCTGCGATTGACAGGACGAGGAGGAGGAGGAGGAACAGTGGTGGGGGC
TCCTAGAGGTCGAAGTTCTTCAAGAGGGCGAGGCAGAGGTAGAGGTGAATGTGGTTTCTACCAAAGAAGT
TTTGATGAAGTAGAGGGTGTGTTTGGGCGAGGAGGTGGCAGGGAAATGCATAGATCACAGAGCTGGGAAG
AAAGGGGTGACAGGCGCTTTGAAAAACCAGGAAGAAAAGATGTAGGGAGACCAAATTTTGAGGAAAGTGG
ACCAACGTCTGTGGGGAGAAAGCATGAATTTATACGGTCAGAAAGTGAAAACTGGCGAATCTTTAGAGAG
GAACAGAATGGAGAAGATGAAGATGGAGGTTGGCGGTTAGCTGGATCAAGAAGGGATGGAGAGAGATGGC
GGCCTCACAGTCCTGATGGCCCTCGTTCTACAGGCTGGCGGGAACACATGGAACGCCGTCGGAGGTTTGA
GTTTGATTTTCGAGACCGAGATGATGAGCGTGGTTACCGAAGGGTGCGCTCTGGCAGTGGGAGCATAGAT
GACGACAGGGATAGCTTGCCGGAGTGGTGCTTAGAGGATGCTGAGGAAGAAATGGGCACGTTTGACTCTT
CTGGGGCATTCCTCTCTCTAAAAAAAGTGCAGAAAGAACCTATTCCTGAAGAGCAGGAAATGGACTTTAG
GCCTGTGGAGGAGGGAGAGGAGCGCTCTGACTCTGACAGCAGCCATAACGAAGAGGCCAAAGAACCGGAT
AAGACAAACCGAAGAGAGGGGGAGAAAACAGACAGAGCAGGGGCTGAAGCTAGTGAGGAAGTACCTCAGA
CGTCATTGTCATCTGCTAGACCAGGTACCCCTTCAGATCATCAGCCTCAAGAAGCCACACAGTTTGAGAG
GAAAGATGAACCCAAAGCTGAACAAGTGGAAAAGGCTGAAGAAGAGAATCGGTCAGAAAATAGTCTCTCA
GCCAAGGTCCCCAGCAGAGGGGATGAAACGGTGCCTGCCTCCCAGCAACCCTCCACACCGCTTCCTCCAG
ACACAGCCTCTCCTCTCCTCATCCTGTCGCCTCCTGTTCCTACTCCTAGTTCTGCCTCTCGGCCAGTTGA
GACAGCAGCCGTCGAAGCTCCTGGTATGAGCAGTGTTTCCACAGAGCCAGATGATGAAGAGGGCCTCAAA
CACTTGGAACAGCAAGCTGAGAAGATGGTGGCTTATCTCCAAGACAGTGCACTAGACGACGAAAGATTGA
CATCAAAACTGCAAGAGCACCGAGCTAAAGGAGTGTCAATCCCACTGATGCATGAAGCAATGCAGAAGTG
GTATTACAAAGACCCTCAGGGGGAGATTCAAGGTCCCTTTAACAATCAGGAGATGGCCGAGTGGTTTCAG
GCGGGCTATTTTACTATGTCTTTGCTGGTGAAGAGAGCATGTGATGAAAGCTTCCAGCCCCTTGGTGATA
TCATGAAAATGTGGGGAAGGGTTCCTTTCTCTCCAGGCCCAGCTCCCCCTCCTCATATGGGAGAATTGGA
CCAGGAACGCCTGACCAGACAGCAGGAACTCACTGCCTTATACCAGATGCAGCACCTCCAGTACCAGCAG
TTCTTAATCCAACAACAGTATGCACAGGTTTTGGCTCAACAGCAGAAAGCAGCTTTGTCATCTCAGCAGC
AACAACAATTGGCTCTTCTTCTGCAGCAGTTCCAGGCTCTGAAGATGAGAATGTCTGATCAGAACATCAT
TCCCTCAGTAACTAGGTCTGTGTCAGTGCCAGATACTGGCTCTATCTGGGAGCTTCAGCCAGCAGCCTCA
CAGCCTGCAGTTTGGGAAGGTGGTAGTGTATGGGATCTTCCCCTGGACACCACAGCACCAGGTCCTTCCC
TGGAACAGCTTCAGCAGCTAGAGAAGGCCAAAGCTGCAAAGTTAGAACAGGAGAGAAGAGAGGCAGAAAT
GAGGGCAAAAAGGGAAGAGGAGGAGCGAAAGAGGCAAGAAGAACTCCGAAGACAACAGGAGGAAATCCTT
CGGAGGCAGCAGGAGGAAGAAAGGAAAAGACGGGAAGAAGAGGAACTTGCTCGAAGGAAGCAGGAGGAGG
CTCTGCGGCGCCAACGGGAGCAAGAGATTGCGCTAAGGCGGCAGCGAGAAGAGGAGGAAAGACAGCAGCA
GGAAGAAGCTCTTAGACGATTGGAGGAGCGGAGGAGAGAAGAGGAGGAAAGGCGGAAGCAGGAAGAACTG
CTGCGCAAGCAGGAAGAGGAGGCTGCCAAATGGGCCCGGGAAGAGGAAGAAGCCCAGCGCCGACTGGAAG
AGAACCGGCTGCGCATGGAGGAGGAGGCTGCCAGACTTCGGCATGAAGAAGAAGAAAGAAAACGGAAGGA
ATTGGAGCTGCAGAGGCAGAAGGATCTGATGCGTCAGAGACAGCAGCAGCAAGAGGCTCTCCGAAGGCTG
CAGCAGCAACAGCAGCAGCAACAGCTTGCACAAATGAAGCTTCCCTCTTCGTCAACGTGGGGTCAGCAGT
CTAACACAGCAACATGTCAGTCCCAGGCCACGCTGTCATTGGCTGAGATCCAGAAGCTGGAAGAAGAACG
AGAACGCCAGCTTCGTGAAGAGCAAAGACGTCAGCAGAGGGAATTGATGAAAGCTCTCCAGCAGCAGCAG
CAGCAGCAGCAACAACAAAAACTCTCAGGTTGGGGGAATGTCAGCAAACCTGCAGGTACCACCAAGTCTC
TACTAGAGATCCAGCAGGAAGAGGCCAGGCAGATGCAGAAGCAGCAGCAGCAGCAACAACAACAACAACA
GCAACACCAGCAATCAAACAGAGCCCGGAACAGCACACATTCCAACCTGCATACCAGCCTTGGGAATTCT
GTATGGGGCTCTATAAACACAGGTCCTTCTAACCAGTGGGCGTCTGAGCTAGTCAGTAGTATCTGGAGTA
ATGCAGACACCAAAAACTCCAACATGGGGTTTTGGGATGATGCAGTGAAAGAGGTGGGACCTAGAAATTC
AACAAATAAAAATAAAAACAACGCCAGTCTCAGTAAATCTGTAGGTGTGTCTAACCGGCAGAATAAGAAA
GTAGAAGAAGAAGAAAAGTTGCTGAAGCTCTTTCAGGGAGTAAATAAAGCCCAAGATGGATTTACCCAGT
GGTGTGAACAGATGCTTCATGCCCTTAATACGGCAAATAACTTGGATGTTCCCACGTTTGTTTCTTTCTT
GAAAGAAGTGGAGTCTCCTTATGAAGTCCATGACTATACCAGGGCCTATTTAGGAGATACTTCCGAGGCC
AAGGAGTTTGCCAAGCAGTTCCTTGAACGCCGTGCCAAACAGAAAGTCAACCAGCAGCGTCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGGACTCTGTCTGGGGGATGAACCATAGTACACTCCATTCGGTATTTCAGAC
CAATCAAAGCAACAACCAACAATCAAATTTTGAGGCTGTGCAAAGTGGCAAGAAGAAGAAAAAGCAGAAG
ATGGTTCGAGCAGATCCCAGTTTATTAGGGTTTTCAGTCAACGCCTCGTCAGAGCGACTGAACATGGGTG
AGATTGAGACTCTGGATGACTACTGA

Translation (1291 aa):
MAAETQTLNFGPEWLRALSSGGSITSPPLSPALPKYKLADYRYGREEMLALFLKDYKIPFDLLEKEFLPI
LQEEPLPPLALVPFTEEEQRNFSMSVNSAAVLRLTGRGGGGGTVVGAPRGRSSSRGRGRGRGECGFYQRS
FDEVEGVFGRGGGREMHRSQSWEERGDRRFEKPGRKDVGRPNFEESGPTSVGRKHEFIRSESENWRIFRE
EQNGEDEDGGWRLAGSRRDGERWRPHSPDGPRSTGWREHMERRRRFEFDFRDRDDERGYRRVRSGSGSID
DDRDSLPEWCLEDAEEEMGTFDSSGAFLSLKKVQKEPIPEEQEMDFRPVEEGEERSDSDSSHNEEAKEPD
KTNRREGEKTDRAGAEASEEVPQTSLSSARPGTPSDHQPQEATQFERKDEPKAEQVEKAEEENRSENSLS
AKVPSRGDETVPASQQPSTPLPPDTASPLLILSPPVPTPSSASRPVETAAVEAPGMSSVSTEPDDEEGLK
HLEQQAEKMVAYLQDSALDDERLTSKLQEHRAKGVSIPLMHEAMQKWYYKDPQGEIQGPFNNQEMAEWFQ
AGYFTMSLLVKRACDESFQPLGDIMKMWGRVPFSPGPAPPPHMGELDQERLTRQQELTALYQMQHLQYQQ
FLIQQQYAQVLAQQQKAALSSQQQQQLALLLQQFQALKMRMSDQNIIPSVTRSVSVPDTGSIWELQPAAS
QPAVWEGGSVWDLPLDTTAPGPSLEQLQQLEKAKAAKLEQERREAEMRAKREEEERKRQEELRRQQEEIL
RRQQEEERKRREEEELARRKQEEALRRQREQEIALRRQREEEERQQQEEALRRLEERRREEEERRKQEEL
LRKQEEEAAKWAREEEEAQRRLEENRLRMEEEAARLRHEEEERKRKELELQRQKDLMRQRQQQQEALRRL
QQQQQQQQLAQMKLPSSSTWGQQSNTATCQSQATLSLAEIQKLEEERERQLREEQRRQQRELMKALQQQQ
QQQQQQKLSGWGNVSKPAGTTKSLLEIQQEEARQMQKQQQQQQQQQQQHQQSNRARNSTHSNLHTSLGNS
VWGSINTGPSNQWASELVSSIWSNADTKNSNMGFWDDAVKEVGPRNSTNKNKNNASLSKSVGVSNRQNKK
VEEEEKLLKLFQGVNKAQDGFTQWCEQMLHALNTANNLDVPTFVSFLKEVESPYEVHDYTRAYLGDTSEA
KEFAKQFLERRAKQKVNQQRQQQQQQQQQQDSVWGMNHSTLHSVFQTNQSNNQQSNFEAVQSGKKKKKQK
MVRADPSLLGFSVNASSERLNMGEIETLDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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