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Report for CCDS23815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23815.1 Public Mus musculus 10 Sec63 23 108 98 CCDS HistoryNCBI Gene:140740Re-query CCDS DB by CCDS ID:23815.1Re-query CCDS DB by GeneID:140740See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019937.4 ENSMUSP00000019937.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019937.4Link to Ensembl Protein Viewer:ENSMUSP00000019937.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019937Re-query CCDS DB by Protein ID:ENSMUSP00000019937
Original member Current member NCBI NM_153055.3 NP_694695.3 Accepted alive Link to Nucleotide Sequence:NM_153055.3Link to Protein Sequence:NP_694695.3Re-query CCDS DB by Nucleotide ID:NM_153055Re-query CCDS DB by Protein ID:NP_694695Link to BLAST:NP_694695.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694695.3 760 Q8VHE0 760 100% 0 0

Chromosomal Locations for CCDS 23815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 42761765 42761888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42783442 42783541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42789300 42789414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42791179 42791291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42794775 42794836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42796206 42796264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42797683 42797733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42798747 42798855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42801633 42801727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42801822 42801954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42803890 42803982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42805076 42805230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42806524 42806671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42810843 42810925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42812436 42812495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42812665 42812838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42815055 42815213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42816368 42816469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42823881 42823979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42827877 42827981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42828891 42829034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGGCGGGCCAGCAGTTCCAGTACGATGACAGCGGGAACACCTTCTTCTACTTCCTCACCTCCTTCGTGG
GGCTCATCGTGATCCCCGCCACCTACTACCTCTGGCCGCGAGACCAGAACGCGGAGCAAATTCGATTAAA
GAATATCAGAAAAGTATATGGAAGATGTATGTGGTATCGTTTACGGTTATTAAAACCCCAGCCAAATATT
ATTCCTACAGTAAAGAAAATAGTTCTGCTTGCAGGATGGGCACTGTTCTTATTTCTTGCATACAAAGTTT
CCAAAACAGACCGAGAATATCAAGAGTACAATCCTTATGAAGTACTAAATTTGGATCCTGGAGCAACAGT
GGCAGAAATTAAGAAACAGTATCGCTTGTTGTCACTTAAATATCATCCAGATAAAGGAGGTGATGAAGTC
ATGTTCATGAGGATAGCAAAAGCATATGCAGCTTTAACAGATGAAGAGTCTCGGAAAAATTGGGAAGAAT
TTGGAAATCCAGATGGGCCTCAAGCTACAAGCTTTGGAATTGCTTTGCCAGCTTGGATAGTTGACCAGAA
AAATTCAATTCTGGTTTTACTTGTGTATGGATTGGCTTTTATGGTTATTCTTCCTGTTGTGGTGGGCTCT
TGGTGGTATCGGTCAATACGATATAGTGGAGACCAGATTCTAATACGTACAACACAGATTTATACATACT
TTGTTTATAAAACTCGAAATATGGATATGAAACGTCTCATCATGGTTTTAGCTGGAGCTTCTGAATTTGA
CCCTCAGTATAATAAAGATTCCACAAGCAGGCCAACAGATAATATTTTAATACCACAGCTAATCAGGGAA
ATTGGCAGCATAAATTTAAAGAAGAATGAACCTCCACTCACCTGTCCATACAGCCTGAAGGCCAGAGTTC
TTTTACTGTCTCATCTTGCTAGAATGAAAATTCCTGAGACACTGGAAGAAGATCAACAGTTCATGCTGAA
AAAATGTCCTGCTCTGCTTCAAGAAATGGTTAATGTAATCTGCCAGCTAATAATAATGGCCCGGAGCCGT
GAAGAAAGGGAGTTTCGTGCTCCAACTTTGGCATCCTTAGAAAACTGTATGAAGCTTTCCCAGATGGCTG
TTCAGGGGCTCCAGCAGTTTAAGTCTCCCCTTCTGCAGCTCCCTCATATTGAAGAGGACAATCTTAGGAG
AGTTTCGAATCATAAAAAGTACAAAATTAAAACTATCCAGGATTTGGTTAGTTTAAAAGAATCAGATCGT
CATAGTCTGCTACACTTCCTTGAAGATGAAAAGTATGAAGAGGTCATGGCGGTCCTTGGGAGTTTCCCGT
ATGTGACCATGGACATAAAATCACAGGTCTTGGATGATGAAGATAGCAACAACATCACAGTAGGATCCCT
AGTTACAGTGTTGGTTAAGTTGACGAGGCAGACCATGGCTGAAGTGTTTGAAAAGGAGCAGTCCATCTGC
GCCGCTGAGGAGCAGCCCACAGAAGACGGGCAGAGTGATGCCAACAAGATCAAGGCAAAAGGAGGATGGC
AGCAGAAGAACAAAGGACCCAAGAAAATGCCCAAATCCAAAAAAAAGAAGCCTTTAAAAAAGAAACCCAC
AACTGTACCCTTACCTCAGGCAAAGCAGCAGAAGCAAAAGCAAGCAAATGGAGTTGTTGGGAGTGAAGCT
GCAATAAAGGAGGAAGAAGACGACATTTCTGACAAGGGCAGTGATTCTGAAGAGGAAGAAACCAATAGAG
ATTCTCAGAGTGAGAAAGAAGATGGTAGTGACAGGGAGTCTGATAGAGAGCAAGATGAGAAACAAAGCAA
AGATGATGAAGCAGAGTGGCAAGAGTTACAACAGAGTATACAGAGGAAAGAGAGAGCTCTTCTGGAGACC
AAGTCAAAGATAACACACCCTGTCTATAGTCTCTACTTTCCTGAGGAAAAACAAGAGTGGTGGTGGCTTT
ATATTGCAGATAGGAAAGAACAAACATTAATATCCATGCCATATCATGTGTGCACACTGAAGGATACAGA
AGAGGTAGAACTGAAGTTTCCCGCACCCGGCAAGCCTGGAAATTATCAGTATACAGTGTTCCTGAGATCA
GACTCCTATATGGGCTTGGATCAGATTAAACCACTGAAGTTGGAAGTTCATGAGGCCAAGCCTGTGCCAG
AAAACCACCCACAGTGGGACACAGCGATAGAAGGTGACGAAGACCAGGAAGACAGTGAAGGATTTGAAGA
CAGCTTTGAGGAAGAGGAGGAGGAAGAGGAAGGTGGAGACTAA

Translation (760 aa):
MAGQQFQYDDSGNTFFYFLTSFVGLIVIPATYYLWPRDQNAEQIRLKNIRKVYGRCMWYRLRLLKPQPNI
IPTVKKIVLLAGWALFLFLAYKVSKTDREYQEYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEV
MFMRIAKAYAALTDEESRKNWEEFGNPDGPQATSFGIALPAWIVDQKNSILVLLVYGLAFMVILPVVVGS
WWYRSIRYSGDQILIRTTQIYTYFVYKTRNMDMKRLIMVLAGASEFDPQYNKDSTSRPTDNILIPQLIRE
IGSINLKKNEPPLTCPYSLKARVLLLSHLARMKIPETLEEDQQFMLKKCPALLQEMVNVICQLIIMARSR
EEREFRAPTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDR
HSLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTRQTMAEVFEKEQSIC
AAEEQPTEDGQSDANKIKAKGGWQQKNKGPKKMPKSKKKKPLKKKPTTVPLPQAKQQKQKQANGVVGSEA
AIKEEEDDISDKGSDSEEEETNRDSQSEKEDGSDRESDREQDEKQSKDDEAEWQELQQSIQRKERALLET
KSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTVFLRS
DSYMGLDQIKPLKLEVHEAKPVPENHPQWDTAIEGDEDQEDSEGFEDSFEEEEEEEEGGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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