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Report for CCDS23942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23942.1 Public Mus musculus 10 Zfp280b 23 108 98 CCDS HistoryNCBI Gene:64453Re-query CCDS DB by CCDS ID:23942.1Re-query CCDS DB by GeneID:64453See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061617.6 ENSMUSP00000056340.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061617.6Link to Ensembl Protein Viewer:ENSMUSP00000056340.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061617Re-query CCDS DB by Protein ID:ENSMUSP00000056340
Original member Current member NCBI NM_177475.3 NP_803426.2 Accepted alive Link to Nucleotide Sequence:NM_177475.3Link to Protein Sequence:NP_803426.2Re-query CCDS DB by Nucleotide ID:NM_177475Re-query CCDS DB by Protein ID:NP_803426Link to BLAST:NP_803426.2

Chromosomal Locations for CCDS 23942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 76038289 76039893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGAGCAGCCATTCACGGTAGATGATGAAGACGAACAAGATCCAGAACCACAGCCGAGGTCAGGAGAAC
CCATTCAAGTCCTCGATGACGATGCTGCTGAAGATGCAGAGCTGATCTTCGTAGGGGTGGAGAAGGTAAA
GGAAGATGCTGAGCTTATCTTTGTTGGGGTGACTTCAGCTTCCCAGCCAGCCAACTCGAACATTTTGAAC
AGAGTCACCCCAGGTTCACGGTTAAAAAGAAAGCATGACCGACTTAGAGCAACCACGACTCAGAGGTTGC
AGCCCTCACGTCCTGCCGCCCCCACATCAGAGGCCGTGGTTGTCTTGCCAGCATCTCCAGCTGAATCAAG
GTCGACGGATAGTCCTATTGCTATTGAGCCTTTGTCCGAGTCTGATTATAGAAGTAGTTCACCACAGGTT
GTGCCTAGTAGCTCTTCCAAGTGCTGTTCGCCTCTGGTCACACTCTCAAGTTCAGAGAATAGTCCAGTAA
AGGCAGCGCTTTCAGGAGGAGATCTGAATGAAAATTTGTATGTATCGAAGTGCCATTTTTCCATAAATCC
ACAGAGGCCTGACCATAGTATTGAGATTGTAGAACCACTTTCTTCAGCTTTGCCCCCTTCAGGTACCTTC
CATACCTCGAATATGCAACAGAGGACACCTTCCTTTGATGCTCCCAACTCTCTGAGCCGTCTTGTGAATG
GGGCACCTCCTTCAGAGGACTCTGCCCACCCTCGTCAGGACAGTGGATTGGCGGAAGCAGACTTTTCAAG
TCCAGCAAGTCAAGAGACTTTTGATCCCAAGAAAGGAAGTTTGACCCTGTTACTTAGTGACTTTTATTAT
GGACAGTATAAAGGAGATGGGAAGCCGGAGCAGAAGACTCACACAACCTTTAAATGCCCCAGCTGCTTGA
AAGCTCTAAAAAATGTTAAATTCATGAACCACACCAAGCATCATTTGGAGCTCGAGAGGCAGGGGAGTGA
GGACGCCTGGGAGAGCCACACCACCTGTCTGCGCTGCCACCGGCAGTTCGATTCCCCGTTCCAGCTGGAG
TGCCACATCGACCGAGTGCACACGTCACCGGACCCTTCCGTGGTCTGCAAAATCTGTGAGTTGTCCTTTG
AGACCGACCAAGTCCTTTTACAGCACATGAAAGACAATCACAAGCCTGGGGAGATGCCCTATGTGTGCCA
GGTCTGTAAGTACAGGTCGTCAGGCTTCGCGGACGTGGAGACACACTTTACAAAGTGCCATGTAAACACT
AAGAACCTGCTTTGTCCATTTTGTCTTAAGATCTTCAAAACTGGGATGCCATACATGTGCCATTACAGGG
GCCACTGGGAAAGGAGCGGCCACCAGTGCTCCAAGTGCCGACTACAGTTTTTAACCTTCAAGGAGAAAAT
GGAGCACAAGACTCAGTGCCACCAAATGTTTAAGAAGCCTAAGCAGCTGGAAGGGCTGCCTCCCGAGACG
AAGGTCGTGATCCAGGTGTCCCTGCAGCCCGTGGAGTCAGAATCTGTGAAGGTAGCATCGATCACTGTGA
GCACAACTGACTGGGAGCCTTCTAACCCCCGACCTCAAGGCAGACTTTCACAGAAGCCCCATTAA

Translation (534 aa):
MEQPFTVDDEDEQDPEPQPRSGEPIQVLDDDAAEDAELIFVGVEKVKEDAELIFVGVTSASQPANSNILN
RVTPGSRLKRKHDRLRATTTQRLQPSRPAAPTSEAVVVLPASPAESRSTDSPIAIEPLSESDYRSSSPQV
VPSSSSKCCSPLVTLSSSENSPVKAALSGGDLNENLYVSKCHFSINPQRPDHSIEIVEPLSSALPPSGTF
HTSNMQQRTPSFDAPNSLSRLVNGAPPSEDSAHPRQDSGLAEADFSSPASQETFDPKKGSLTLLLSDFYY
GQYKGDGKPEQKTHTTFKCPSCLKALKNVKFMNHTKHHLELERQGSEDAWESHTTCLRCHRQFDSPFQLE
CHIDRVHTSPDPSVVCKICELSFETDQVLLQHMKDNHKPGEMPYVCQVCKYRSSGFADVETHFTKCHVNT
KNLLCPFCLKIFKTGMPYMCHYRGHWERSGHQCSKCRLQFLTFKEKMEHKTQCHQMFKKPKQLEGLPPET
KVVIQVSLQPVESESVKVASITVSTTDWEPSNPRPQGRLSQKPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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