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Report for CCDS25700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25700.1 Public Mus musculus 11 Cep295nl 23 108 98 CCDS HistoryNCBI Gene:58251Re-query CCDS DB by CCDS ID:25700.1Re-query CCDS DB by GeneID:58251See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25700.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103024.3 ENSMUSP00000099313.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103024.3Link to Ensembl Protein Viewer:ENSMUSP00000099313.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103024Re-query CCDS DB by Protein ID:ENSMUSP00000099313
Original member Current member EBI ENSMUST00000168100.1 ENSMUSP00000128122.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168100.1Link to Ensembl Protein Viewer:ENSMUSP00000128122.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168100Re-query CCDS DB by Protein ID:ENSMUSP00000128122
Original member Current member NCBI NM_021440.2 NP_067415.2 Accepted alive Link to Nucleotide Sequence:NM_021440.2Link to Protein Sequence:NP_067415.2Re-query CCDS DB by Nucleotide ID:NM_021440Re-query CCDS DB by Protein ID:NP_067415Link to BLAST:NP_067415.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067415.2 533 Q497N6 533 100% 0 0

Chromosomal Locations for CCDS 25700.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118332415 118334016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGCAGAGAGACACGGAGCGAGCAGCTCAGCTGAGCCCTTCTTCCGAAGATGAAGCCTTAGTTTTGAGGC
AGAAGCCGTTAGAGATGCCAGCCCAAGAGGAGGACAGTACCACTCTGCAGCAGTGGAAAGCACGGCAGCT
GCAACGCCTGGCTGAGGAGTTAAAGGCAGAGTGGCAGGAGGCCCGGCTGCAGCAGGTCCGACAGGCTGAA
CGCCTCTACTTATCCCACCTGTTGGACGAGGCAGCCGAGCGGAGCATGGGAAACGATCCCAGCGTGCATG
AACAGAACCAGAGAAGAACAGCAAAACACACAAGGGCTAAAGAGAGAAACCGAGCAGCTTTCAGAGAGGA
GCGGGGCCGCAGGGAGGAGCACCCCAGGCAGCACCCCAAGTCCCGGAAAAAGGCACCATGCTCAGAGAGA
CGCAGTTCTGCCAAAGCCCGGGGCCCAGCCTCCGGTGAGAAGGGTAAAAGGAGACGGGTGTCTTCAAGTA
AGGACCACGATGGCTACCAGGGCCCTCGGGTGACCAGAAGGGTAGGTGTGGCAAAGCTCAACCCATTCTT
TGATGGAGACACTGACTGCATGGAGGACGTGCAGAAGGAATTCTTCCGGGAGGGGAGGCGGCCCTCGGCA
AAGGGGACTCACAACCTCAGGGACCAGAGTCTACAGGGCAAAACAACAGCCCTAACTCAGCCCTTGCTCC
ACGGCCCCACCTGCAAACAAGAGGCTGCAGCCCAGGAGCCCCCAAGCAAGTACAACAAGAATCTGTGGCA
CAAAGAAATCGAATCTACCTTTGAAGAATTGTTTAACATGAATAGGAAGCTGAAGAAACATTTGAATTTG
CACCTGGAACAGAGGCTCAAGGCAGACCAGAATCCAGATGAGCAGCAGAGCTACTCAGAGATTCGGAGTG
AGACCTTTGGCACCCCGAGAGAGGAGAGGACGGAGGAGGTAGAAACCGCCGAGGAGTCTGGGAGCCCAAC
CGAGGTGGAGACCACTGAGATGTGGTCCAAAGTCAATCTGAAACAGATACTGAGTGACTCAGAGTACCCC
AGATACCAGCAGATAGCAAAGTACCCGTTAAAGAGTGAAAGCCTAGTGCCTGTCAAGGCAGGGACATCTA
GAGAACAAGATGACTTACTCTCACTAAGCCCAGAGTCAGGACAGGAGCCGCCCAAGTCACCTTTGTTGGA
GGACGAAAGCCTCAAGCCTTACCTGCAGAAACAGGCAGACTCTGTAGCAAGCTGGATGGCTTTGAGGCAA
AAGCAGAAGGCAGAGTTGGAGCAGAGAAGGCAAAAGGCACTTTTGGAGCTGACAGAACACCCCAACATGA
GCTTGGAGATCCACTACAAGGCTGAGCTGGAGGAAGAACGCCGGGCGCGTAGACGGATGCGCTTGGCTCT
CCTCAAATCTAATTCCACTGGGATCTGTGCCCTGCCCCCTGACCGAAACAACCTGTCCCTGGACAACGGC
CTTCTCGATGAGGACAAACAGAACCAGATGATTCGTGACCTCCAGCAGCAGATCTTAGAGCAAAACAAGT
TACACCAGGAGTTTTTGGAAAAAGCCAGGAAACGCTTGCAAGAGTTTCAAAAATCATTTTAA

Translation (533 aa):
MQRDTERAAQLSPSSEDEALVLRQKPLEMPAQEEDSTTLQQWKARQLQRLAEELKAEWQEARLQQVRQAE
RLYLSHLLDEAAERSMGNDPSVHEQNQRRTAKHTRAKERNRAAFREERGRREEHPRQHPKSRKKAPCSER
RSSAKARGPASGEKGKRRRVSSSKDHDGYQGPRVTRRVGVAKLNPFFDGDTDCMEDVQKEFFREGRRPSA
KGTHNLRDQSLQGKTTALTQPLLHGPTCKQEAAAQEPPSKYNKNLWHKEIESTFEELFNMNRKLKKHLNL
HLEQRLKADQNPDEQQSYSEIRSETFGTPREERTEEVETAEESGSPTEVETTEMWSKVNLKQILSDSEYP
RYQQIAKYPLKSESLVPVKAGTSREQDDLLSLSPESGQEPPKSPLLEDESLKPYLQKQADSVASWMALRQ
KQKAELEQRRQKALLELTEHPNMSLEIHYKAELEEERRARRRMRLALLKSNSTGICALPPDRNNLSLDNG
LLDEDKQNQMIRDLQQQILEQNKLHQEFLEKARKRLQEFQKSF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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