NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29428.1 Public Mus musculus 19 Syt12 23 108 98 CCDS HistoryNCBI Gene:171180Re-query CCDS DB by CCDS ID:29428.1Re-query CCDS DB by GeneID:171180See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059295.9 ENSMUSP00000055237.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059295.9Link to Ensembl Protein Viewer:ENSMUSP00000055237.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000059295Re-query CCDS DB by Protein ID:ENSMUSP00000055237
Original member Current member NCBI NM_134164.5 NP_598925.1 Accepted alive Link to Nucleotide Sequence:NM_134164.5Link to Protein Sequence:NP_598925.1Re-query CCDS DB by Nucleotide ID:NM_134164Re-query CCDS DB by Protein ID:NP_598925Link to BLAST:NP_598925.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598925.1 421 Q920N7 421 100% 0 0

Chromosomal Locations for CCDS 29428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4447687 4447860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4450929 4451062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4452277 4452397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4453765 4453980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4456495 4456887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4460617 4460810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4467907 4467940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCCGTGGACGTGACAGAATATCATCTGAGCGTCATCAAGAGCCCCCCAGGCTGGGAGGTGGGTGTCT
ATGCTGCCGGGGCCCTGGCTCTGCTGGGAATTGCTGCTGTGAGTCTATGGAAGCTCTGGACATCGGGGAG
CTTCCCCAGCCCCTCCCCGTTCCCTAATTACGACTACAGGTACCTGCAGCAGAAATATGGAGAGGCCTAT
GTGGAGGCTAAGCTGAAGCGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCC
GCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGG
CCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATC
TCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATG
GAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTT
CGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGGATCCAGAGG
AATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGA
GCCTTAGATTTTCTGTGTTTGGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAA
GCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAGGCT
GCTGACGCTGTGGGAGAGATCCTGCTGTCCCTCAGTTACCTGCCCACAGCTGAGCGGCTGACTGTGGTTG
TGGTGAAAGCCAAGAATCTCATCTGGACCAATGAGAAGAGCACAGCAGACCCCTTCGTCAAAGTATACCT
GCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTC
AACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAGGACCTGTCTCTCCGGGTGACAGTGGCTG
AGAGCAGCAGCGACGGCCGTGGGGACAACGTGGGCCATGTCATCATTGGGCCAGGGGTCAGTGGCATGGG
CACCACACATTGGAACCAGATGCTGGCCACACTACGCAGGCCTGTGTCCATGTGGCATCCAGTCCGGCGA
AACTAA

Translation (421 aa):
MAVDVTEYHLSVIKSPPGWEVGVYAAGALALLGIAAVSLWKLWTSGSFPSPSPFPNYDYRYLQQKYGEAY
VEAKLKRVPPWNDQRTTTRGPPSRKGSLSIEDTFESISELGPLELMGRELDLAPYGTLRKSQSADSLNSI
SSVSNTFGQDFTLGQVEVSMDYDGASHTLHVAVLQGKDLLEREEATFESCFMRVSLLPDEQIVGISRIQR
NAYSIFFDEKFSVPLDPTALEEKSLRFSVFGIDEDERNVSTGVVELKLSVLDLPLQPFSGWLYLQDQNKA
ADAVGEILLSLSYLPTAERLTVVVVKAKNLIWTNEKSTADPFVKVYLLQDGRKMSKKKTAVKRDDPNPVF
NEAMIFSVPAIVLQDLSLRVTVAESSSDGRGDNVGHVIIGPGVSGMGTTHWNQMLATLRRPVSMWHPVRR
N


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH