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Report for CCDS17358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17358.1 Public Mus musculus 3 Sohlh2 23 108 98 CCDS HistoryNCBI Gene:74434Re-query CCDS DB by CCDS ID:17358.1Re-query CCDS DB by GeneID:74434See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029369.4 ENSMUSP00000029369.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029369.4Link to Ensembl Protein Viewer:ENSMUSP00000029369.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029369Re-query CCDS DB by Protein ID:ENSMUSP00000029369
Original member Current member NCBI NM_028937.3 NP_083213.2 Accepted alive Link to Nucleotide Sequence:NM_028937.3Link to Protein Sequence:NP_083213.2Re-query CCDS DB by Nucleotide ID:NM_028937Re-query CCDS DB by Protein ID:NP_083213Link to BLAST:NP_083213.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083213.2 467 Q9D489 467 100% 0 0

Chromosomal Locations for CCDS 17358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 55182067 55182114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55189121 55189335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55190310 55190371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55190454 55190558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55192239 55192335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55195073 55195183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55196727 55196874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55196998 55197086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55204334 55204455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55207593 55207849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55208887 55209036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGCCGACCGGATCAGCACTGGGGAGCTAGGCCGGAGGCCTGGGCAGGGCAGAGTAAATCTTTTGCTGG
TTGGAGATGCCACAAGATACTTCCTGGCTGGCTCTATGCAGAAATTCTTTCCTAGCACAGCACAGATCAC
CCTGACCATCAGCAATGTGAAGAAGGTCGCCGTGCTTTTGGCTGCTAACTCGTTTGACATAATTTTCTTG
AAGGTGACTTCCACTCTAACTGCAGAGGAGCAGGAGGCTGCCAAGTTAATTAGATCTGGCAAGAAGAAAA
ACACACATTTGCTGTTTGCTTTTGTAATACCTGAAAGACTTAAAGGCTATGTTTCAGAATATGGAGCTGA
CATTAGTTTCAGTGAGCCGCTGACCTTGGAAAAAGTGAACACGGTGATACACTACTGGAAAACGTATTTC
ACAAATACGGATATGGAAAACACTGAGTTGCCTCCAGAATGCCGGCTGTACTTTCAGACGTCCCGCAGTG
AACTCGGAGGGCGTTTTTCTACAGATATGTTTCTTTGCTCTGAACTGCTGAAGAATGACGCTAGACTTGG
ATTAAAGGCCCCGTTGTCGAGTCTAGACAAAAGCAAACAGGCGTCTTTTCTTCACTCAACCAAAGAAAAG
CTGAGACGAGAACGCATCAAGTCTTGCTGTGAGCAGCTGCGCACGCTCCTGCCATACGTCAAGGGGAGGA
AGAGCGATGTGGCATCAGTTATCGAGGCCACAGTTGATTATGTGAAGCAGGTCCGGGAGTCTCTCTCTCC
AGCCATTATGGCCCAGGTTACAGAAGCCATTCAGAACAATAGAAGGTTTTCTAAGAGACAGATGCCCATC
GAGCTGTTCCTTCCATTCTCAGCCACATCACAGAGGGAAGATGCCATGCTGACCAGCGCTTTCTCACCTG
TGCAAGAGATTCAGCTCCTGGCTGATCGGGGCCTGAACGTGTATTCCATGACTGCTGCAGGAGGAGCTTT
GGAGGGAGCAGTGAGAGGTCAGCCAGGCTCTGTTTCCGAGAGCTCTATTGAGGATCTGTATAAGACTCGC
GTCCCCAGCACAGCCCGATCTCTGAATTCCTTCCACTCTGTCAAATACACTTCTGGAACTGTCTCTCCCC
ATGAGGCAGCTGCCAGGACAAATCAGAACATTTCCACTTATTTGCCACCCACTGCACCCAGTGTGTCCAA
CTTTATTCCTCAGCACTGCAATGCCATGCTTTGCCCAGCACGCCCAACCAGTCCCAACTGCCTGTGCACT
CCGGGCCATGAGCTTGCAGCCAGTTCTCGCGCTGCCTCAGCCAGCATCTTTCGTGGATTCCGTGCGGCGT
CAGCTTCGGATCACCAGGCCTCTCAGCCACCTGCTCTGCCATCTCCACAGCCTCACGACAGTAGTTACTT
TTAA

Translation (467 aa):
MADRISTGELGRRPGQGRVNLLLVGDATRYFLAGSMQKFFPSTAQITLTISNVKKVAVLLAANSFDIIFL
KVTSTLTAEEQEAAKLIRSGKKKNTHLLFAFVIPERLKGYVSEYGADISFSEPLTLEKVNTVIHYWKTYF
TNTDMENTELPPECRLYFQTSRSELGGRFSTDMFLCSELLKNDARLGLKAPLSSLDKSKQASFLHSTKEK
LRRERIKSCCEQLRTLLPYVKGRKSDVASVIEATVDYVKQVRESLSPAIMAQVTEAIQNNRRFSKRQMPI
ELFLPFSATSQREDAMLTSAFSPVQEIQLLADRGLNVYSMTAAGGALEGAVRGQPGSVSESSIEDLYKTR
VPSTARSLNSFHSVKYTSGTVSPHEAAARTNQNISTYLPPTAPSVSNFIPQHCNAMLCPARPTSPNCLCT
PGHELAASSRAASASIFRGFRAASASDHQASQPPALPSPQPHDSSYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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