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Report for CCDS22744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22744.1 Public Mus musculus 8 Cbfa2t3 23 108 98 CCDS HistoryNCBI Gene:12398Re-query CCDS DB by CCDS ID:22744.1Re-query CCDS DB by GeneID:12398See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127984.8 ENSMUSP00000118997.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127984.8Link to Ensembl Protein Viewer:ENSMUSP00000118997.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127984Re-query CCDS DB by Protein ID:ENSMUSP00000118997
Original member Current member NCBI NM_009824.2 NP_033954.2 Accepted alive Link to Nucleotide Sequence:NM_009824.2Link to Protein Sequence:NP_033954.2Re-query CCDS DB by Nucleotide ID:NM_009824Re-query CCDS DB by Protein ID:NP_033954Link to BLAST:NP_033954.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033954.2 620 O54972-1 620 99.8387% 0 1

Chromosomal Locations for CCDS 22744.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122630707 122630976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122633318 122633508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122634360 122634428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122634949 122635147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122635754 122635839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122637994 122638223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122638857 122639038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122642964 122643053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122643292 122643533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122647701 122647778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122650330 122650476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122698815 122698893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGTCCCAGGCATCCACCACCACTCTGGAGAGTGGGGCACTCCTCTCGGGACCCCGGGGTCTTCAGAATG
GAAGCCCAGCTCACAGGAAGGAGAAGGCTGCAGCAATGCCAGACTCCCCGGCTGAAGTGAAGACGCAGCC
CCGGTCCACACCCCCCAGCATGCCGCCCCCACCTCCCACCTCATCCCAGGGAGCCACACGACCACCCTCC
TTCACACCTCACACACATGGCGAGGATGGACCTGCGACGTCTCTTCCCCATGGCCGTTTCCACGGCTGCT
TAAAGTGGTCCATGGTCTGTCTCTTGATGAACGGCAGCAGCCACTCACCCACGGCCATCCACGGTGCCCC
ATCTACACCCAATGGCTTCAGCAACGGCCCAGCCACCTCATCCACGGCCTCGCTCTCCACACAGCACCTG
CCCCCGGCGTGCGGGGCACGGCAGCTCAGCAAGCTTAAGCGTTTCCTCACCACCCTACAGCAGTTTGGCA
GTGACATCTCACCTGAGATCGGGGAGCGCGTGCGCACACTGGTGCTGGGCCTGGTGAACTCAACTCTGAC
GATCGAAGAGTTTCATGCCAAGCTCCAGGAAGCCACCAACTTTCCACTGAGGCCGTTTGTTATCCCTTTT
CTGAAGGCTAATCTTCCACTGCTGCAGCGTGAGCTCCTGCACTGTGCCCGCCTGGCCAAACAGACACCTG
CCCAGTACCTGGCCCAGCACGAACAGCTGCTGCTGGACGCCAGCGCCACCTCCCCTGTCGACTCGTCTGA
GCTCCTGCTGGAAGTCAACGAGAACGGCAAAAGGAGAACACCTGACAGGACCAAAGAGAATGGATCAGAC
CGGGACCCTCTGCACCCCGACCACCTCAGTAAGCGGTCCTGCACCCTGAGCCCCGCCCAGCGCTGCAGCC
CCAGCAATGGGCTGCCCCACCCGACGCCACCCCCACCCCCGCACTATCGCCTGGAGGACATGGCCATGGC
CCACCATTTCCGGGACTCCTACCGCCATCCTGATCCCCGAGAGCTACGGGAACGCCACCGGCCCCTGGCC
ATACCTGGGTCTCGACAAGAAGAAGTGATTGATCACAGGCTCACAGAACGCGAGTGGGCAGAAGAATGGA
AGCACCTCAACAGTCTTCTGAACTGCATCATGGACATGGTGGAGAAGACCCGGCGATCCCTCACCGTCCT
GCGCCGGTGTCAGGAGGCCGACCGTGAGGAACTCAACCACTGGATCCGGTGCTACAGTGACTCTGAGGAG
GGGAAGAAGGGCCCTACCCCCATCTCTGCCCGGTCCCTCAACAGCTGCAGTGGCCCTGAGGGGTCTCAGC
TAGATGTTCACCGGGACTTCACGCCCAGGACCCTGTCTGGCTACATGCCTGAAGAGATCTGGAGGAAGGC
TGAAGAAGCTGTGAATGAGGTGAAGCGCCAGGCCATGTCAGAACTACAGAAAGCTGTGTCTGATGCGGAG
CGCAAAGCCCATGAACTCATCACCACAGAGCGTGCCAAGATGGAACGAGCCCTGGCGGAGGCCAAGCGAC
AGGCCTCGGAGGATGCCCTGACTGTCATCAACCAGCAAGAGGACTCCAGCGAGAGCTGCTGGAACTGCGG
GCGCAAGGCCAGCGAGACGTGCAGTGGCTGTAACGCCGCCCGCTACTGCGGGTCCTTCTGTCAGCACAAA
GACTGGGAGAAACACCATCACGTGTGCGGCCAGAGTCTGCAGGGCCCCGCGGCTGCAGTGGCTGACCCAC
TACCTGGACAGCCTGACGCCACTGCCAGCCCCAGCGAAGCCGGCTCGGCAGGGCCCTCTCGTCCCTGCTC
TCCGGGGCCGCCAGGCCCGCTGGACGCTGCTGTGCCCCGCTGA

Translation (620 aa):
MSQASTTTLESGALLSGPRGLQNGSPAHRKEKAAAMPDSPAEVKTQPRSTPPSMPPPPPTSSQGATRPPS
FTPHTHGEDGPATSLPHGRFHGCLKWSMVCLLMNGSSHSPTAIHGAPSTPNGFSNGPATSSTASLSTQHL
PPACGARQLSKLKRFLTTLQQFGSDISPEIGERVRTLVLGLVNSTLTIEEFHAKLQEATNFPLRPFVIPF
LKANLPLLQRELLHCARLAKQTPAQYLAQHEQLLLDASATSPVDSSELLLEVNENGKRRTPDRTKENGSD
RDPLHPDHLSKRSCTLSPAQRCSPSNGLPHPTPPPPPHYRLEDMAMAHHFRDSYRHPDPRELRERHRPLA
IPGSRQEEVIDHRLTEREWAEEWKHLNSLLNCIMDMVEKTRRSLTVLRRCQEADREELNHWIRCYSDSEE
GKKGPTPISARSLNSCSGPEGSQLDVHRDFTPRTLSGYMPEEIWRKAEEAVNEVKRQAMSELQKAVSDAE
RKAHELITTERAKMERALAEAKRQASEDALTVINQQEDSSESCWNCGRKASETCSGCNAARYCGSFCQHK
DWEKHHHVCGQSLQGPAAAVADPLPGQPDATASPSEAGSAGPSRPCSPGPPGPLDAAVPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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