NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40513.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40513.2 Public Mus musculus 8 Agt 23 108 98 CCDS HistoryNCBI Gene:11606Re-query CCDS DB by CCDS ID:40513.2Re-query CCDS DB by GeneID:11606See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 40513.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 40513.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238882.1 ENSMUSP00000159140.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238882.1Link to Ensembl Protein Viewer:ENSMUSP00000159140.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238882Re-query CCDS DB by Protein ID:ENSMUSP00000159140
Original member Current member NCBI NM_007428.4 NP_031454.4 Accepted alive Link to Nucleotide Sequence:NM_007428.4Link to Protein Sequence:NP_031454.4Re-query CCDS DB by Nucleotide ID:NM_007428Re-query CCDS DB by Protein ID:NP_031454Link to BLAST:NP_031454.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031454.4 477 P11859 477 99.1614% 0 4

Chromosomal Locations for CCDS 40513.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 124556930 124557121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124557741 124557885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124559230 124559497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124563723 124564551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGACTCCCACGGGGGCAGGCCTGAAGGCCACCATCTTCTGCATCTTGACCTGGGTCAGCCTGACGGCTG
GGGACCGCGTATACATCCACCCCTTCCATCTCCTTTACCACAACAAGAGCACCTGCGCCCAGCTGGAGAA
CCCCAGTGTGGAGACACTCCCAGAGTCAACGTTCGAGCCTGTGCCCATTCAGGCCAAGACCTCCCCTGTG
AATGAGAAGACCCTGCATGATCAGCTCGTGCTGGCCGCCGAGAAGCTAGAGGATGAGGACCGGAAGCGGG
CTGCCCAGGTCGCAATGATCGCCAACTTCGTGGGCTTCCGCATGTACAAGATGCTGAATGAGGCAGGAAG
TGGGGCCAGTGGGGCCATCCTCTCACCACCAGCTCTCTTTGGCACCCTGGTCTCTTTCTACCTTGGATCC
TTAGATCCCACGGCCAGCCAGCTGCAGACGCTGCTGGATGTCCCTGTGAAGGAGGGAGACTGCACCTCCC
GACTAGATGGACACAAGGTCCTCGCTGCCCTGCGGGCCATTCAGGGCTTGCTGGTCACCCAGGGTGGGAG
CAGCAGCCAGACACCCCTGCTACAGTCCATTGTGGTGGGGCTCTTCACTGCTCCAGGCTTTCGTCTAAAG
CACTCATTTGTTCAGAGCCTGGCTCTCTTTACCCCTGCCCTCTTCCCACGCTCTCTGGATTTATCCACTG
ACCCAGTTCTTGCCACTGAGAAAATCAACAGGTTCATAAAGGCTGTGACAGGGTGGAAGATGAACTTGCC
ACTGGAGGGGGTCAGTACAGACAGCACCCTACTTTTCAACACCTACGTTCACTTCCAAGGAACGATGAGA
GGTTTCTCTCAGCTGCCTGGAGTCCATGAATTCTGGGTGGACAACAGCATCTCGGTGTCTGTGCCCATGA
TCTCCGGCACTGGCAACTTCCAGCACTGGAGTGACACCCAGAACAACTTCTCCGTGACGTGCGTGCCCCT
AGGTGAGAGAGCCACCCTGCTGCTCATCCAGCCCCACTGCACCTCAGATCTCGACAGGGTGGAGGCCCTC
ATCTTCCGGAACGACCTCCTGACTTGGATAGAGAACCCGCCTCCTCGGGCCATCCGCCTGACTCTGCCCC
AGCTGGAAATCCGAGGATCCTACAATCTGCAGGACCTGCTGGCTGAGGACAAGCTGCCCACCCTTTTGGG
TGCGGAGGCAAATCTGAACAACATTGGTGACACCAACCCCCGAGTGGGAGAGGTTCTCAATAGCATCCTC
CTCGAACTCAAAGCAGGAGAGGAGGAACAGCCGACCACGTCTGTCCAGCAGCCTGGCTCACCGGAGGCAC
TGGATGTGACCCTGAGCAGCCCCTTCCTGTTCGCCATCTACGAGCAGGACTCAGGCACGCTGCACTTTCT
GGGCAGAGTGAATAACCCCCAGAGTGTGGTGTGA

Translation (477 aa):
MTPTGAGLKATIFCILTWVSLTAGDRVYIHPFHLLYHNKSTCAQLENPSVETLPESTFEPVPIQAKTSPV
NEKTLHDQLVLAAEKLEDEDRKRAAQVAMIANFVGFRMYKMLNEAGSGASGAILSPPALFGTLVSFYLGS
LDPTASQLQTLLDVPVKEGDCTSRLDGHKVLAALRAIQGLLVTQGGSSSQTPLLQSIVVGLFTAPGFRLK
HSFVQSLALFTPALFPRSLDLSTDPVLATEKINRFIKAVTGWKMNLPLEGVSTDSTLLFNTYVHFQGTMR
GFSQLPGVHEFWVDNSISVSVPMISGTGNFQHWSDTQNNFSVTCVPLGERATLLLIQPHCTSDLDRVEAL
IFRNDLLTWIENPPPRAIRLTLPQLEIRGSYNLQDLLAEDKLPTLLGAEANLNNIGDTNPRVGEVLNSIL
LELKAGEEEQPTTSVQQPGSPEALDVTLSSPFLFAIYEQDSGTLHFLGRVNNPQSVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH