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Report for CCDS51037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51037.1 Public Mus musculus 3 Cimap3 23 108 98 CCDS HistoryNCBI Gene:100503311Re-query CCDS DB by CCDS ID:51037.1Re-query CCDS DB by GeneID:100503311See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51037.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066319.7 ENSMUSP00000069454.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066319.7Link to Ensembl Protein Viewer:ENSMUSP00000069454.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066319Re-query CCDS DB by Protein ID:ENSMUSP00000069454
Original member Current member NCBI NM_029604.3 NP_083880.2 Accepted alive Link to Nucleotide Sequence:NM_029604.3Link to Protein Sequence:NP_083880.2Re-query CCDS DB by Nucleotide ID:NM_029604Re-query CCDS DB by Protein ID:NP_083880Link to BLAST:NP_083880.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083880.2 207 Q9D9W1-1 207 100% 0 0

Chromosomal Locations for CCDS 51037.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 105997131 105997199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105998272 105998389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105999528 105999658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106000372 106000470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106001098 106001243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106001327 106001387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGAACACGGAGGAAATACCGGTTGCTCCTCCGCTCCGTGGAGTTACACCTGCTTTACAATGGAAGGTGA
ATAATTACTCCTTTGGAACACGTCAAGCGAGGAAACTCTTTCCTCACTACCATCCCCCAACCTGGCTGGG
GAACCTGTATCTCCCTCTTAGGGGAATGCCCCACACAGGCCCTGGGTGTTATGCAGCAGCAACAGATTGG
AATGGTTTGGCATATAATCTATCGAAAGTCCCAACCAGTACGAAAGGCTATGCTATTGGAGCCAGGACAG
CTGTGAGGTTTAAGCCAATCAGCAAGGATGTGACACCATACCCAGGGATGTATCAGAAAGTTGATACTTT
GAGTGAAAAACACAAAAAAAGCTTTGCTCCATTTAATATCTTGATGCCTCGATTTAGGAGTGCAGCAAAG
GGTGATTCTTACCCCGGCCCTGGCACATACAATCCAGAGATGAAGTCAGTCCCAAAAGTTACTTGGCCAA
TGAAATTTGGATCTCCAGACTGGTCTCAGGTTCCATGTCTAGAGAAAAGGACTCTAAAGGCTGAGCTGTC
CGCAGACAAGGACTTTAGAAAGCATCGTAGCCGTGTGGCCTACTTTAGCCTATATTACCAGTGA

Translation (207 aa):
MNTEEIPVAPPLRGVTPALQWKVNNYSFGTRQARKLFPHYHPPTWLGNLYLPLRGMPHTGPGCYAAATDW
NGLAYNLSKVPTSTKGYAIGARTAVRFKPISKDVTPYPGMYQKVDTLSEKHKKSFAPFNILMPRFRSAAK
GDSYPGPGTYNPEMKSVPKVTWPMKFGSPDWSQVPCLEKRTLKAELSADKDFRKHRSRVAYFSLYYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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