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Report for CCDS16414.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16414.2 Public Mus musculus 2 Fnbp4 23 108 98 CCDS HistoryNCBI Gene:55935Re-query CCDS DB by CCDS ID:16414.2Re-query CCDS DB by GeneID:55935See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16414.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 16414.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238890.1 ENSMUSP00000159108.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238890.1Link to Ensembl Protein Viewer:ENSMUSP00000159108.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238890Re-query CCDS DB by Protein ID:ENSMUSP00000159108
Original member Current member NCBI NM_018828.3 NP_061298.2 Accepted alive Link to Nucleotide Sequence:NM_018828.3Link to Protein Sequence:NP_061298.2Re-query CCDS DB by Nucleotide ID:NM_018828Re-query CCDS DB by Protein ID:NP_061298Link to BLAST:NP_061298.2

Chromosomal Locations for CCDS 16414.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 90745598 90745826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90746696 90746788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90751068 90751204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90751432 90751618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90752819 90752966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90753070 90753190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90757336 90757686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90758294 90758504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90763421 90763545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90765830 90765934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90767408 90767541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90768516 90768700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90775905 90776221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90776331 90776475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90777565 90777920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90779199 90779356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90779561 90779651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3093 nt):
ATGGGGAAGAAGTCCCGGGCGGTACCCGGCCGCAGGCCTATCCTGCAGCTCTCTCCACCGGGTCCTCGGA
GCAGCACCCCGGGCCGGGATCCCGACCCCGATCCGGATCCCGAGGCAGATTCGACTGCGGCGGCGACAAG
CCAGTCAGCGCCGGCAGCAGCGACGGCGGCGGCCGCGACGTCGCCCGCGGTGCCTGCCTCCGCTGCCCCA
GAGGACTCGCCTTCAGAAGATGAACAAGAAGTGGTGGTGGAGGTCCCCAACGTTGTTCAGAACCCTCCAA
CACCAGTCATGACCACCAGACCGACAGCCGTCAAGGCAACAGGAGGTCTGTGCTTACTTGGTGCTTATGC
TGACAGCGATGACGATGAGAGTGATGTGTCTGAGAAAACAGCCCAATCCAAAGAGGCCAACGGAAACCAG
GCCACTGACATTGACAGCACACTGGCCAACTTCCTAGCGGAGATAGACGCCATAACAGCACCTCAGCCTG
CAGCTCCTGTGGTAGCTTCTGCTCCACCTCCAACTCCACCTCGACCAGAACCAAAAGAAGCGGCAACACC
TGCCCTTTCTCCCACCGCATCAAATGGATCAGACACTGCCCAGACGCCAGGGTGGCATTATGACACTCAG
TGTTCATTGGCAGGAGTTGAAATTGAGATGGGAGATTGGCAAGAAGTCTGGGATGAGAACACAGGTTGCT
ATTATTATTGGAACACACAAACAAATGAAGTGACTTGGGAGTTACCCCAATACCTTGCTACACAGGTTCA
GGGATTACAACATTACCAGCCCAGTTCTGTAACAGGTACCGAGGCTGCTTTTGTGGTAAATACAGACATG
TATACAAAGGAGAGGACAACTGCTGCTTCCAGTAGTAAAAGTGGACCAGTCATCACCAAACGAGAAGTTA
AAAAGGAAGTGAATGAAGGAATCCAAGCCCTTTCCAACAGTGAGGAGGAGAGGAAAGGGGTAGCAGCTGC
ATTGCTCGCTCCTTTACTGCCTGAAGGGGTAAAAGAGGAGGAAGAAAGATGGAGAAGAAAAGTAATTTGT
AAAGAAGCAGATCCGGTGTCAGAGACTAAGGAAACAAGCACAGCTTCGGAGGAGACGGGCCCGAGTATAA
AGCCACCGGAAGTGATGATGGACGGCACAGAAGACCCTTCTCAGGAGGAGCTCTGCAGTGTCGTTCAATC
TGGAGAAAGTGAGGAGGAGGAGGAAGAGGAGGAGCAAGACACCCTTGAGCTGGAGCTAGCTTTGGAAAGG
AAAAAGGCAGAGTTACGAGCCTTGGAGGAAGGAGATGGTAGTGTGTCAGGGTCTAGTCCACGTTCTGACA
TCAGCCAGCCAGCATCTCAGGACGGAGTGCGTAGGATTATGTCTAAAAGAGGAAAATGGAAGATGTTTGT
TCGAGCCACCAGTCCAGAATCCACCAGCCGAAGTTCTAGTAAAACTGGACGAGATTCTCCAGAAAATGGA
GAAACTGCAATTGGTGCTGAAGATTCCGAAAAAATAGATGAAATTTCAGACAAAGAAACGGAAGTAGAAG
AGTCTTCTGAGAAGATCAAAGTCCAGCTAGCACCTAAAGTGGAGGAAGAGCAGGACCTGAAATTTCAGAT
TGGAGAACTGGCAAATACCCTGACAAGTAAATTTGAATTCCTAGGGATTAATAGGCAGTCCATCTCCAAC
TTTCACATGCTGCTCTTACAGACTGAGACTCGAATTGCAGACTGGCGGGAAGGGGCTCTCAATGGAAATT
ACCTAAAACGAAAGCTTCAGGATGCTGCAGAACAGCTAAAACAGTATGAAATAAACGCCACTCCTAAAGG
CTGGTCCTGCCACTGGGACAGGGATCATAGACGATATTTCTATGTAAACGAACAGTCGGGCGAGTCTCAA
TGGGAATTCCCAGATGGTGAGGAGGAGGAAGAAAGCCAAACAAAGGAAGTTAGAGATGAGAGTCTGCCTA
AGCTGACCGTGAAGGACAAAACCTGCACTGATCCAAACTCTACAGAATCCTCTGAGAACCCGACAGGTTC
TCTTTGTAAAGAATCATTTTCTGGTCAAGTTTCTTCATCACTCATGCCACTTACTCCATTCTGGACCCTC
CTCCAATCAAATGTACCTGTGCTTCAACCTCCATTACCTCTGGAAATGCCGCCACCTCCACCTCCACCCC
CGGAGTCTCCACCTCCACCTCCTCCACCTCCTCCTCCACCCCCACCATTAGAAGATGGTGAGATTCAGGA
GGTAGAAATGGAGGACGAGGGAAGTGAGGAGCCTCCTGCCCCCGGAACAGAGGAGGACACTCCTTTGAAA
CCTTCAACACAGACCACAGCTGTAACCAGCCAGAGTCTAGTTGATTCTACTGCCTCTAGTCCTCCATCCA
ATAAAGCAGTAAAGAGGAAGGCTCCAGAAATGAGTACTTCGGTAGTTCAGAGATCAGCCACTATTGGTAG
TTCTCCAGTTCTCTATAGCCAGTCAGCTATAGCTGCAGGTCACCAAGCTGTTGGGATGGCACACCAGGCT
GTTGGGATGGCACACCAAGCAGTATCTGCTAGCCATGCAGCAGCAGCAGGAGTGGGTCATCAGGCCCGAG
GGATGAGCCTGCAGTCAAATTACCTCGGCCTAGCAGCAGCACCTGCGCTGATGAGTTATGCTGAATGTTC
TGTCCCAATTGGAGTGACTACTCCATCGCTGCAGCCAGCTCAGGCTCGAGGAACTATGGCAGCACCTGCT
GTTGTAGAACCACCTCCACCTCCACCTCCTCCCCCTACACCTACACCACCACCGCCACCACCAGCTCCCA
AAGTGCCACCGCCCGAGAAGACGAGAAAAGGGAAGAAAGATAAGGCAAAGAAAAGTAAAACTAAAATGCC
ATCCTTGGTAAAGAAATGGCAGAGTATCCAGCGGGAGTTAGATGAAGAAGATAATTCAAGTTCCAGTGAA
GAAGACCGGGAATCGACTGCACAGAAGCGGATTGAGGAATGGAAACAGCAGCAGCTGGTGAGTGGCCTGG
CAGAAAGAAATGCTAATTTTGAAGCCCTTCCTGAGGATTGGCGAGCAAGACTGAAGAGAAGGAAAATGGC
TCCCAGCACATAG

Translation (1030 aa):
MGKKSRAVPGRRPILQLSPPGPRSSTPGRDPDPDPDPEADSTAAATSQSAPAAATAAAATSPAVPASAAP
EDSPSEDEQEVVVEVPNVVQNPPTPVMTTRPTAVKATGGLCLLGAYADSDDDESDVSEKTAQSKEANGNQ
ATDIDSTLANFLAEIDAITAPQPAAPVVASAPPPTPPRPEPKEAATPALSPTASNGSDTAQTPGWHYDTQ
CSLAGVEIEMGDWQEVWDENTGCYYYWNTQTNEVTWELPQYLATQVQGLQHYQPSSVTGTEAAFVVNTDM
YTKERTTAASSSKSGPVITKREVKKEVNEGIQALSNSEEERKGVAAALLAPLLPEGVKEEEERWRRKVIC
KEADPVSETKETSTASEETGPSIKPPEVMMDGTEDPSQEELCSVVQSGESEEEEEEEEQDTLELELALER
KKAELRALEEGDGSVSGSSPRSDISQPASQDGVRRIMSKRGKWKMFVRATSPESTSRSSSKTGRDSPENG
ETAIGAEDSEKIDEISDKETEVEESSEKIKVQLAPKVEEEQDLKFQIGELANTLTSKFEFLGINRQSISN
FHMLLLQTETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATPKGWSCHWDRDHRRYFYVNEQSGESQ
WEFPDGEEEEESQTKEVRDESLPKLTVKDKTCTDPNSTESSENPTGSLCKESFSGQVSSSLMPLTPFWTL
LQSNVPVLQPPLPLEMPPPPPPPPESPPPPPPPPPPPPPLEDGEIQEVEMEDEGSEEPPAPGTEEDTPLK
PSTQTTAVTSQSLVDSTASSPPSNKAVKRKAPEMSTSVVQRSATIGSSPVLYSQSAIAAGHQAVGMAHQA
VGMAHQAVSASHAAAAGVGHQARGMSLQSNYLGLAAAPALMSYAECSVPIGVTTPSLQPAQARGTMAAPA
VVEPPPPPPPPPTPTPPPPPPAPKVPPPEKTRKGKKDKAKKSKTKMPSLVKKWQSIQRELDEEDNSSSSE
EDRESTAQKRIEEWKQQQLVSGLAERNANFEALPEDWRARLKRRKMAPST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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