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Report for CCDS11066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11066.1 Public Homo sapiens 17 SLC52A1 24 110 108 CCDS HistoryNCBI Gene:55065Re-query CCDS DB by CCDS ID:11066.1Re-query CCDS DB by GeneID:55065See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11066.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254853.10 ENSP00000254853.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254853.10Link to Ensembl Protein Viewer:ENSP00000254853.5Re-query CCDS DB by Nucleotide ID:ENST00000254853Re-query CCDS DB by Protein ID:ENSP00000254853
Original member Current member EBI ENST00000424747.1 ENSP00000399979.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424747.1Link to Ensembl Protein Viewer:ENSP00000399979.1Re-query CCDS DB by Nucleotide ID:ENST00000424747Re-query CCDS DB by Protein ID:ENSP00000399979
Original member Current member NCBI NM_001104577.2 NP_001098047.1 Accepted alive Link to Nucleotide Sequence:NM_001104577.2Link to Protein Sequence:NP_001098047.1Re-query CCDS DB by Nucleotide ID:NM_001104577Re-query CCDS DB by Protein ID:NP_001098047Link to BLAST:NP_001098047.1
Original member Current member NCBI NM_017986.4 NP_060456.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017986.4Link to Protein Sequence:NP_060456.3Re-query CCDS DB by Nucleotide ID:NM_017986Re-query CCDS DB by Protein ID:NP_060456Link to BLAST:NP_060456.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098047.1 448 Q9NWF4-1 448 100% 0 0
NP_060456.3 448 Q9NWF4-1 448 100% 0 0

Chromosomal Locations for CCDS 11066.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 5032957 5033169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5033261 5033384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5033479 5034358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5034477 5034606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGGCAGCACCCACGCTGGGCCGTCTGGTGCTGACCCACCTGCTGGTGGCCCTTTTTGGCATGGGCTCCT
GGGCTGCTGTGAACGGGATCTGGGTGGAGCTGCCTGTGGTGGTAAAAGACCTTCCAGAGGGTTGGAGCCT
CCCCTCATACCTCTCTGTGGTTGTGGCGCTGGGAAACCTGGGTCTGCTGGTGGTGACCCTGTGGAGGCAG
CTGGCCCCGGGCAAGGGCGAGCAGGTCCCCATCCAGGTGGTACAGGTGCTGAGTGTAGTGGGCACAGCCC
TGCTGGCCCCTCTGTGGCACCACGTGGCCCCAGTGGCAGGGCAGCTCCACTCTGTGGCCTTCCTAACTCT
GGCCTTGGTGTTGGCAATGGCCTGTTGTACCTCTAATGTCACTTTCCTGCCCTTCCTGAGCCACCTGCCA
CCTCCTTTCTTACGGTCTTTCTTCCTGGGTCAGGGTCTCAGTGCCCTACTCCCCTGTGTGCTGGCCCTAG
TGCAAGGTGTGGGCCGCCTCGAGTGCCCACCAGCGCCCACCAATGGCACCTCTGGGCCTCCCCTCGACTT
CCCTGAGCGTTTTCCTGCCAGCACCTTCTTCTGGGCACTGACTGCCCTTCTGGTCACTTCAGCTGCCGCC
TTCCGGGGTCTCCTGTTGCTGTTGCCATCACTACCCTCTGTAACCACAGGGGGCTCAGGGCCTGAACTTC
AACTGGGATCCCCAGGAGCAGAGGAGGAAGAGAAGGAGGAAGAAGAGGCTTTGCCATTGCAGGAGCCACC
GAGCCAGGCAGCAGGCACCATCCCTGGCCCAGACCCTGAGGCCCATCAGCTGTTCTCAGCCCATGGTGCC
TTCCTGCTGGGCCTGATGGCCTTCACCAGTGCCGTGACCAATGGCGTGCTGCCTTCTGTGCAGAGCTTTT
CCTGTTTGCCCTATGGGCGCCTGGCCTACCACCTGGCTGTGGTGCTGGGCAGTGCCGCCAACCCCCTTGC
CTGCTTCCTGGCCATGGGCGTGCTGTGCAGGTCCCTGGCAGGGCTGGTTGGTCTTTCTCTGCTGGGCATG
CTCTTTGGGGCCTACCTGATGGCACTGGCAATCCTGAGCCCCTGCCCACCCCTGGTGGGCACCACTGCAG
GGGTGGTCCTTGTGGTGCTGTCGTGGGTGCTGTGTCTGTGTGTGTTCTCATATGTGAAGGTGGCTGCAAG
CTCCCTGCTGCATGGTGGGGGTCGGCCGGCATTGCTGGCAGCTGGTGTGGCCATCCAAGTGGGCTCCCTG
CTTGGTGCCGGTGCCATGTTCCCTCCCACCAGCATCTACCACGTGTTTCAAAGCAGAAAGGACTGTGTAG
ACCCCTGTGGCCCCTGA

Translation (448 aa):
MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNLGLLVVTLWRQ
LAPGKGEQVPIQVVQVLSVVGTALLAPLWHHVAPVAGQLHSVAFLTLALVLAMACCTSNVTFLPFLSHLP
PPFLRSFFLGQGLSALLPCVLALVQGVGRLECPPAPTNGTSGPPLDFPERFPASTFFWALTALLVTSAAA
FRGLLLLLPSLPSVTTGGSGPELQLGSPGAEEEEKEEEEALPLQEPPSQAAGTIPGPDPEAHQLFSAHGA
FLLGLMAFTSAVTNGVLPSVQSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVLCRSLAGLVGLSLLGM
LFGAYLMALAILSPCPPLVGTTAGVVLVVLSWVLCLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSL
LGAGAMFPPTSIYHVFQSRKDCVDPCGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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