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Report for CCDS50428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50428.1 Public Mus musculus 19 Cyp26c1 23 108 98 CCDS HistoryNCBI Gene:546726Re-query CCDS DB by CCDS ID:50428.1Re-query CCDS DB by GeneID:546726See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073391.4 ENSMUSP00000073105.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073391.4Link to Ensembl Protein Viewer:ENSMUSP00000073105.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000073391Re-query CCDS DB by Protein ID:ENSMUSP00000073105
Original member Current member NCBI NM_001105201.1 NP_001098671.1 Accepted alive Link to Nucleotide Sequence:NM_001105201.1Link to Protein Sequence:NP_001098671.1Re-query CCDS DB by Nucleotide ID:NM_001105201Re-query CCDS DB by Protein ID:NP_001098671Link to BLAST:NP_001098671.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098671.1 518 B2RXA7 518 100% 0 0

Chromosomal Locations for CCDS 50428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 37685680 37685883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37686437 37686661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37687119 37687394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37688830 37688985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37690710 37691027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37692930 37693307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGATTTCCTGGGGGCTGAGCTGTTTGTCCGTGCTGGGGGCTGCCGGCACCACTCTCCTGTGTGCGGGTC
TGCTGCTCGGCCTGGCCCAACAACTCTGGACCCTCCGCTGGACTCTGAGCCGGGATTGGGCCTCCACCTT
GCCCCTACCCAAGGGCTCCATGGGCTGGCCATTCTTCGGTGAAACGCTGCACTGGTTGGTACAGGGCTCT
CGTTTCCACAGTTCCCGCCGCGAGCGCTACGGGACAGTGTTTAAGACGCACCTTCTGGGCAGGCCAGTGA
TCCGGGTGAGCGGCGCTGAGAACGTGCGCACCATCCTGCTGGGCGAGCACCGCCTGGTGCGTAGCCAGTG
GCCACAGAGTGCGCATATTCTACTAGGGTCACACACACTACTTGGCGCGGTTGGTGAGCCCCATCGGCAA
CGGCGTAAGGTCCTGGCGCGCGTGTTCAGCCGCTCCTCTCTGGAGCAATTCGTGCCACGGTTGCAGGGGG
CGCTGCGGCGAGAGGTGCGCTCCTGGTGCGCCGCCCAACGACCGGTGGCTGTTTACCAGGCGGCCAAAGC
ACTCACCTTCCGCATGGCCGCGCGCATCCTGCTGGGTCTGCAGCTGGACGAAGCGCGATGCACCGAGCTG
GCCCATACCTTTGAACAGCTGGTGGAGAACCTCTTCTCACTGCCCTTGGACGTACCGTTCAGCGGCCTGC
GCAAGGGCATCCGGGCCAGGGACCAGTTGTATGAGCACCTGGATGAGGCCGTCGCTGAGAAGCTTCAGGA
GAAACAGACAGCAGAGCCAGGTGATGCCCTGCTCTTGATTATTAACAGCGCTAGGGAGCTGGGCCACGAG
CCCTCAGTGCAAGAGCTGAAGGAGTTGGCTGTAGAGCTCCTCTTCGCGGCCTTTTTCACCACAGCCAGCG
CCAGCACATCCCTCATCCTGCTGCTTCTGCAGCACCCAGCAGCCATCACCAAAATCCAGCAGGAGCTGTC
AGCGCAGGGCCTGGGGCGCGCGTGCACTTGCACACCCAGAGCCTCAGGATCGCCACCGGACTGCGGTTGT
GAGCCGGACCTTAGCCTGGCCATGCTGGGCCGTTTGCGCTACGTCGACTGCGTAGTCAAGGAGGTGCTGC
GCCTCCTACCGCCGGTGTCCGGGGGCTACCGCACTGCGCTGCGCACCTTTGAACTGGACGGTTACCAGAT
CCCCAAAGGCTGGAGCGTGATGTATAGCATCCGAGACACGCATGAGACAGCCGCAGTGTACCGTAGCCCG
CCCGAGGGCTTCGATCCGGAGCGCTTTGGCGTGGAGAGTGGAGACGCGCGGGGCTCCGGTGGCCGCTTTC
ATTACATCCCGTTCGGCGGCGGCGCGCGCAGCTGCCTGGGGCAGGAGCTAGCGCAGGCGGTGCTGCAACT
GCTCGCAGTCGAGCTGGTGCGCACCGCGCGCTGGGAGCTGGCCACACCTGCCTTCCCCGTAATGCAGACG
GTGCCCATCGTGCACCCGGTGGACGGGCTGCTGCTCTTTTTCCACCCTCTTCCGACTTCGGGTGCGGGAG
ATGGGTTACCCTTCTGA

Translation (518 aa):
MISWGLSCLSVLGAAGTTLLCAGLLLGLAQQLWTLRWTLSRDWASTLPLPKGSMGWPFFGETLHWLVQGS
RFHSSRRERYGTVFKTHLLGRPVIRVSGAENVRTILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRQ
RRKVLARVFSRSSLEQFVPRLQGALRREVRSWCAAQRPVAVYQAAKALTFRMAARILLGLQLDEARCTEL
AHTFEQLVENLFSLPLDVPFSGLRKGIRARDQLYEHLDEAVAEKLQEKQTAEPGDALLLIINSARELGHE
PSVQELKELAVELLFAAFFTTASASTSLILLLLQHPAAITKIQQELSAQGLGRACTCTPRASGSPPDCGC
EPDLSLAMLGRLRYVDCVVKEVLRLLPPVSGGYRTALRTFELDGYQIPKGWSVMYSIRDTHETAAVYRSP
PEGFDPERFGVESGDARGSGGRFHYIPFGGGARSCLGQELAQAVLQLLAVELVRTARWELATPAFPVMQT
VPIVHPVDGLLLFFHPLPTSGAGDGLPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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