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Report for CCDS51904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51904.1 Public Mus musculus 6 Vmn2r27 23 108 98 CCDS HistoryNCBI Gene:232367Re-query CCDS DB by CCDS ID:51904.1Re-query CCDS DB by GeneID:232367See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100968.3 ENSMUSP00000098528.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100968.3Link to Ensembl Protein Viewer:ENSMUSP00000098528.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100968Re-query CCDS DB by Protein ID:ENSMUSP00000098528
Original member Current member NCBI NM_001104642.1 NP_001098112.1 Accepted alive Link to Nucleotide Sequence:NM_001104642.1Link to Protein Sequence:NP_001098112.1Re-query CCDS DB by Nucleotide ID:NM_001104642Re-query CCDS DB by Protein ID:NP_001098112Link to BLAST:NP_001098112.1

Chromosomal Locations for CCDS 51904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124191596 124192500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124197221 124197344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124200499 124200723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124223677 124224483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124230168 124230465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124231570 124231784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2574 nt):
ATGAAATTACTCATTGCCTTCTCTCTAGTGATTGTTCTCATTTCATTCCAGGAAAAAATGTCTTGTTTCT
ACATAAGTGTACCTGATTCTCCTGGCTACAATCAAGATGGGGATTTTCTTATTGGAGGATTCTTTTCCCT
TAGAGTGACTGGTCGAGAAGACAGAACTGAATTTTGCTTTAATGAGACAATGAATATGACATATGGTAGT
TATTTCAATCTACCTAAACATTATCAGCACATATTGGCAATGGTTTTTGCTGTAGAAACAATCAACAAGG
ACCCAAATATTCTATTCAATATGTCCTTGGGATTTTATCTCTTTGATGTTGACTTTATTGTGATGAAGGC
CATGGAAAGTTGTATGGTGTTGATCTCAGGAGAGAGACCACCAATTCCTAACTACAGCTGCAGGCCCGAG
AAGACTAATAAGCCGGTTGCAGTGATAGGAGGCTATTCAAAAGCAATAACAGCTCAGATCTCCCAAGTTC
TAAGTCTCTACAATGTCCCACAGATCAGCTATGCTCCTTTTGATCAGAGTCTTGCAAGCAGAGTCCAGCT
CCAGTCTCCTTACCAGTTTCCTGTGCACACTGCAGCTCTGTATCAGGGAATTATTCAACTGATGCTATAC
TTCACTTGGGTCTGGGTTGGCCTGGTAGTTCCAGATGATATGAGGGGAGAACTCTACATTACAGAACTCA
CAGAAGACATGACCAAGCACGGACTTTGTATTGCATTTGCAGTACGGAGTCCAATATTTCCTTGTCGGAA
CACAGTAAATTTGATAATTTTAGAGGAAGAACTTGGAAGTTTAGACGTTGTCCTTGTATATGGTGACTCA
TATGATTTTTTCTGGATTGTCCTTTACATCCCGTTCTTGCCTTTTAATGGCAATGTCTTGATCACAAATT
CTGATTGGTATACCACATTTCCTTATTTCCATAATCAAGTTTATGAGTACTTTGGTGGAGTATTATTATT
TTCAGATCACATGGATGAAATTCTGGGATTCAAGGAGTTTCTCAGAAATCTTCAACCTAGAAAATATCCT
CAGAATATCTTTATTCAGGATATGTGGTCCATCGTATTTGAGTGTCCACATTTGTATCTGCACAAAGTCA
GGGAACTAAGTCAATGTGAGCCAAATGGCAGCCTGAGCACACGACCTCTGCATGTTTGGGATATGAATAC
CTCACCTATGAGCTACAAAGTCCATGCTGCTGTGTATGCCATCGCCCAGGCACTCCATGTGGAGCTGTCA
GTCAGAGTGGAAGGAGATTCATTTGATAAAGGTGTACTCCGGGCTCCTCTCCCATGGAAGCTCCATCCAT
TCTTACAAAATGGCCAGTTCGTGAGACTCTCCAATGAGGAGAACATTGTGAACAAGGAGGGTTCAGCAAC
CAAACTTGACATCTTTAATTACCAGTCTCTGCAGAGCGGTACTGAAGGTCATGTGAAGGTTGGTGAATTT
GTCTTCGAACCTCACAGAGTTCAGCATTTGTCCCTAAATGAAGAACTTATAAGGTGGGGTGAATACCACA
ATATGTCTGCTTTACATGTTTGCAGTCAAACCTGTCCACTTGGATTTAGCAAAATACCTGATGATTGGAG
ACCACTCTGTTGTTACGATTGTGCCCCATGTCCAGATGGAGAATTTGCAAATGAAACAGATATGGATCAA
TGCATCAAGTGTCCTGAAGATCAGTATCCAAATGAGCAGAGAAATCAGTGTCTTCCTAAAATTACAGCAT
TTTTGTCCCATGAAGATACTCTGGGAGCTGTTTTGGGCTCCATGGCCATTAGTTTTGCTGCTTTTTCAGC
TATGATTTTAGGATTATTTATCCACTATCGGGACACACCCATTGTCAGAGCAAATAACAGAAATCTCAGT
TATCTCCTCCTAGTTTCTCTAAAGCTCTGTTTCTTTTGCTCACTAATGTTCATTGGTGAACCTAGAAGAG
TCACTTGTCTCTTGAGACAAATGATTTTTGGGGTTGTATTTTCTGTTGCCCTTTCTGCAGTCTTGGCAAA
GACTTTCATTGTGGTTGTGGCCTTCAAAGTCATCAAACCAGGAAGCACCTTACAAATGAGGATGGCGACC
CAAATCTCAAATGCTATAGTCTGCTGTGGTTCCATCATTCAAGTGTGCATCTGTGCAGTCTGGCTGGGAA
CATATCCCCCTTTCCCTGATGTTGACATGCACTCAGAGTTTGGTCAAATCATCCTCTGGTATAACGAGGG
GTCCACCCTTGCCTTCTATTGTGTTCTAGGGTACTTGGGCTTTCTTGCCAGTCTCAGCTTGTTTATTGCT
TTTCTGGTGAGAAGTCTACCTGACAGCTTCAATGAGGCAAAAACAATCACTTTCAGCATGCTGGTTTTCT
GCAGTGTGTGGATTTCTTTTGTATTTACTTACCTTAGGTCCAAAGCCAAAACCATGGTGGCTGTGGAAAT
TGTTTCAATTCTTGCCTCCAGTGCTGGCTTACTGAGCTTTATCTTCCTTCCCAAATGCTATGTGATCCTC
CTGAGGTCAGGTGGCTATTCGAGAAAGAAGTTCTTTAAGTCGGTTTCTCCGTAA

Translation (857 aa):
MKLLIAFSLVIVLISFQEKMSCFYISVPDSPGYNQDGDFLIGGFFSLRVTGREDRTEFCFNETMNMTYGS
YFNLPKHYQHILAMVFAVETINKDPNILFNMSLGFYLFDVDFIVMKAMESCMVLISGERPPIPNYSCRPE
KTNKPVAVIGGYSKAITAQISQVLSLYNVPQISYAPFDQSLASRVQLQSPYQFPVHTAALYQGIIQLMLY
FTWVWVGLVVPDDMRGELYITELTEDMTKHGLCIAFAVRSPIFPCRNTVNLIILEEELGSLDVVLVYGDS
YDFFWIVLYIPFLPFNGNVLITNSDWYTTFPYFHNQVYEYFGGVLLFSDHMDEILGFKEFLRNLQPRKYP
QNIFIQDMWSIVFECPHLYLHKVRELSQCEPNGSLSTRPLHVWDMNTSPMSYKVHAAVYAIAQALHVELS
VRVEGDSFDKGVLRAPLPWKLHPFLQNGQFVRLSNEENIVNKEGSATKLDIFNYQSLQSGTEGHVKVGEF
VFEPHRVQHLSLNEELIRWGEYHNMSALHVCSQTCPLGFSKIPDDWRPLCCYDCAPCPDGEFANETDMDQ
CIKCPEDQYPNEQRNQCLPKITAFLSHEDTLGAVLGSMAISFAAFSAMILGLFIHYRDTPIVRANNRNLS
YLLLVSLKLCFFCSLMFIGEPRRVTCLLRQMIFGVVFSVALSAVLAKTFIVVVAFKVIKPGSTLQMRMAT
QISNAIVCCGSIIQVCICAVWLGTYPPFPDVDMHSEFGQIILWYNEGSTLAFYCVLGYLGFLASLSLFIA
FLVRSLPDSFNEAKTITFSMLVFCSVWISFVFTYLRSKAKTMVAVEIVSILASSAGLLSFIFLPKCYVIL
LRSGGYSRKKFFKSVSP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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