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Report for CCDS11362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11362.1 Public Homo sapiens 17 CASC3 24 110 108 CCDS HistoryNCBI Gene:22794Re-query CCDS DB by CCDS ID:11362.1Re-query CCDS DB by GeneID:22794See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11362.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264645.12 ENSP00000264645.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264645.12Link to Ensembl Protein Viewer:ENSP00000264645.6Re-query CCDS DB by Nucleotide ID:ENST00000264645Re-query CCDS DB by Protein ID:ENSP00000264645
Original member Current member NCBI NM_007359.5 NP_031385.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007359.5Link to Protein Sequence:NP_031385.2Re-query CCDS DB by Nucleotide ID:NM_007359Re-query CCDS DB by Protein ID:NP_031385Link to BLAST:NP_031385.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031385.2 703 O15234 703 100% 0 0

Chromosomal Locations for CCDS 11362.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40140549 40140779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40141207 40141234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40141570 40141607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40161753 40161911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40162002 40162153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40162725 40162901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40163481 40164166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40166797 40166861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40167498 40167612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40167850 40167948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40168203 40168417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40169324 40169446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40169598 40169621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGGCGGACCGGCGGCGGCAGCGCGCTTCGCAAGACACCGAGGACGAGGAATCTGGTGCTTCGGGCTCCG
ACAGCGGCGGCTCCCCGTTGCGGGGAGGCGGGAGCTGCAGCGGTAGCGCCGGAGGCGGCGGCAGCGGCTC
TCTGCCTTCACAGCGCGGAGGCCGAACCGGGGCCCTTCATCTGCGGCGGGTGGAGAGCGGGGGCGCCAAG
AGTGCTGAGGAGTCGGAGTGTGAGAGTGAAGATGGCATTGAAGGTGATGCTGTTCTCTCGGATTATGAAA
GTGCAGAAGACTCGGAAGGTGAAGAAGGTGAATACAGTGAAGAGGAAAACTCCAAAGTGGAGCTGAAATC
AGAAGCTAATGATGCTGTTAATTCTTCAACAAAAGAAGAGAAGGGAGAAGAAAAGCCTGACACCAAAAGC
ACTGTGACTGGAGAGAGGCAAAGTGGGGACGGACAGGAGAGCACAGAGCCTGTGGAGAACAAAGTGGGTA
AAAAGGGCCCTAAGCATTTGGATGATGATGAAGATCGGAAGAATCCAGCATACATACCTCGGAAAGGGCT
CTTCTTTGAGCATGATCTTCGAGGGCAAACTCAGGAGGAGGAAGTCAGACCCAAGGGGCGTCAGCGAAAG
CTATGGAAGGATGAGGGTCGCTGGGAGCATGACAAGTTCCGGGAAGATGAGCAGGCCCCAAAGTCCCGAC
AGGAGCTCATTGCTCTTTATGGTTATGACATTCGCTCAGCTCATAATCCTGATGACATCAAACCTCGAAG
AATCCGGAAACCCCGATATGGGAGTCCTCCACAAAGAGATCCAAACTGGAACGGTGAGCGGCTAAACAAG
TCTCATCGCCACCAGGGTCTTGGGGGCACCCTACCACCAAGGACATTTATTAACAGGAATGCTGCAGGTA
CCGGCCGTATGTCTGCACCCAGGAATTATTCTCGATCTGGGGGCTTCAAGGAAGGTCGTGCTGGTTTTAG
GCCTGTGGAAGCTGGTGGGCAGCATGGTGGCCGGTCTGGTGAGACTGTTAAGCATGAGATTAGTTACCGG
TCACGGCGCCTAGAGCAGACTTCTGTGAGGGATCCATCTCCAGAAGCAGATGCTCCAGTGCTTGGCAGTC
CTGAGAAGGAAGAGGCAGCCTCAGAGCCACCAGCTGCTGCTCCTGATGCTGCACCACCACCCCCTGATAG
GCCCATTGAGAAGAAATCCTATTCCCGGGCAAGAAGAACTCGAACCAAAGTTGGAGATGCAGTCAAGCTT
GCAGAGGAGGTGCCCCCTCCTCCTGAAGGACTGATTCCAGCACCTCCAGTCCCAGAAACCACCCCAACTC
CACCTACTAAGACTGGGACCTGGGAAGCTCCGGTGGATTCTAGTACAAGTGGACTTGAGCAAGATGTGGC
ACAACTAAATATAGCAGAACAGAATTGGAGTCCGGGGCAGCCTTCTTTCCTGCAACCACGGGAACTTCGA
GGTATGCCCAACCATATACACATGGGAGCAGGACCTCCACCTCAGTTTAACCGGATGGAAGAAATGGGTG
TCCAGGGTGGTCGAGCCAAACGCTATTCATCCCAGCGGCAAAGACCTGTGCCAGAGCCCCCCGCCCCTCC
AGTGCATATCAGTATCATGGAGGGACATTACTATGATCCACTGCAGTTCCAGGGACCAATCTATACCCAT
GGTGACAGCCCTGCCCCGCTGCCTCCACAGGGCATGCTTGTGCAGCCAGGAATGAACCTTCCCCACCCAG
GTTTACATCCCCACCAGACACCAGCTCCTCTGCCCAATCCAGGCCTCTATCCCCCACCAGTGTCCATGTC
TCCAGGACAGCCACCACCTCAGCAGTTGCTTGCTCCTACTTACTTTTCTGCTCCAGGCGTCATGAACTTT
GGTAATCCCAGTTACCCTTATGCTCCAGGGGCACTGCCTCCCCCACCACCGCCTCATCTGTATCCTAATA
CACAGGCCCCATCACAGGTATATGGAGGAGTGACCTACTATAACCCCGCCCAGCAGCAGGTGCAGCCAAA
GCCCTCCCCACCCCGGAGGACTCCCCAGCCAGTCACCATCAAGCCCCCTCCACCTGAGGTTGTAAGCAGG
GGTTCCAGTTAA

Translation (703 aa):
MADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAK
SAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKS
TVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRK
LWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKPRYGSPPQRDPNWNGERLNK
SHRHQGLGGTLPPRTFINRNAAGTGRMSAPRNYSRSGGFKEGRAGFRPVEAGGQHGGRSGETVKHEISYR
SRRLEQTSVRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEKKSYSRARRTRTKVGDAVKL
AEEVPPPPEGLIPAPPVPETTPTPPTKTGTWEAPVDSSTSGLEQDVAQLNIAEQNWSPGQPSFLQPRELR
GMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPAPPVHISIMEGHYYDPLQFQGPIYTH
GDSPAPLPPQGMLVQPGMNLPHPGLHPHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYFSAPGVMNF
GNPSYPYAPGALPPPPPPHLYPNTQAPSQVYGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSR
GSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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