NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21942.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21942.2 Public Mus musculus 7 Foxi2 23 108 98 CCDS HistoryNCBI Gene:270004Re-query CCDS DB by CCDS ID:21942.2Re-query CCDS DB by GeneID:270004See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21942.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 21942.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060356.7 ENSMUSP00000053641.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060356.7Link to Ensembl Protein Viewer:ENSMUSP00000053641.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000060356Re-query CCDS DB by Protein ID:ENSMUSP00000053641
Original member Current member NCBI NM_183193.3 NP_899016.2 Accepted alive Link to Nucleotide Sequence:NM_183193.3Link to Protein Sequence:NP_899016.2Re-query CCDS DB by Nucleotide ID:NM_183193Re-query CCDS DB by Protein ID:NP_899016Link to BLAST:NP_899016.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899016.2 311 Q3I5G5 311 100% 0 0

Chromosomal Locations for CCDS 21942.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 135410439 135410940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135411599 135412032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCTGGGTTCTGCGACAGCCTGGGTTCCTGCTCAGTCCCGCACGGCCTGACCCGGGCCATCGCGCATC
CCCCGAGCTACGGCCGAACGGATCTGAGCTCTGGCCGGCGCCTGTGGGTGAACTCGGCCGCGCTCAGCCC
GGCGCCCTACGCGACGGGACCAGGGCCGGCTCCATCCTACGCTGCAGCGACTCTCGCCGTCCCGGGTTCG
CTTCTTGGCGCTTCAGGCGGTCTGGCAGGCGCTGATCTCGCTTGGCTGAGCCTGTCCGGACAGCAGGAGC
TGCTGAGGCTGGTACGGCCGCCCTACTCCTACTCAGCACTGATCGCCATGGCCATCCAAAGCGCGCCGCT
ACGCAGGTTGACGCTCAGCCAGATCTACCAGTATGTGGCGGGCAACTTCCCCTTCTACAAGCGCAGCAAG
GCGGGCTGGCAGAACTCCATCCGCCACAACCTGTCGCTCAATGATTGCTTCAAGAAGGTGCCCCGAGATG
AGAACGATCCAGGAAAAGGCAATTATTGGACGCTGGATCCAAACTGTGAGAAGATGTTTGACAATGGGAA
CTTCCGAAGGAAGAGGAGACGGAGAGGAGAGACTAGCGAGGCCGCTGTGCCTGGAGCCAGCAGCCCAGAG
GGAACTGCACTGGAGCCCCGTGGCTCCACTCCCCAGGACCCACAGACCTCACCATCCCCGTCTGAGGCCA
CCACTACTTGCCTCTCGGGCTTCTCCACGGCCATGGGAGCCCTGGCCGGCGGCTTTGGCGCCCTCCCTGA
TGGTCTGGCCCATGACTTTTCTTTGCGAAGGCCACCACCAACCGCGGCTGCCCACAGCCCTCAGATTCCT
AACACCGCGCCAGGCTTCGCTCCGGGCCATCAGACAGGGGCTACAGGCTTTAGGATGGGGCACCTCATCT
ACAGCCGGGATGGGACTGAAGTTTGA

Translation (311 aa):
MAGFCDSLGSCSVPHGLTRAIAHPPSYGRTDLSSGRRLWVNSAALSPAPYATGPGPAPSYAAATLAVPGS
LLGASGGLAGADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSK
AGWQNSIRHNLSLNDCFKKVPRDENDPGKGNYWTLDPNCEKMFDNGNFRRKRRRRGETSEAAVPGASSPE
GTALEPRGSTPQDPQTSPSPSEATTTCLSGFSTAMGALAGGFGALPDGLAHDFSLRRPPPTAAAHSPQIP
NTAPGFAPGHQTGATGFRMGHLIYSRDGTEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH