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Report for CCDS21847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21847.1 Public Mus musculus 7 Doc2a 23 108 98 CCDS HistoryNCBI Gene:13446Re-query CCDS DB by CCDS ID:21847.1Re-query CCDS DB by GeneID:13446See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064110.13 ENSMUSP00000070119.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064110.13Link to Ensembl Protein Viewer:ENSMUSP00000070119.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000064110Re-query CCDS DB by Protein ID:ENSMUSP00000070119
Original member Current member NCBI NM_001368355.1 NP_001355284.1 Accepted alive Link to Nucleotide Sequence:NM_001368355.1Link to Protein Sequence:NP_001355284.1Re-query CCDS DB by Nucleotide ID:NM_001368355Re-query CCDS DB by Protein ID:NP_001355284Link to BLAST:NP_001355284.1
Original member NCBI NM_001368356.1 NP_001355285.1 Updated not alive Link to Nucleotide Sequence:NM_001368356.1Link to Protein Sequence:NP_001355285.1Re-query CCDS DB by Nucleotide ID:NM_001368356Re-query CCDS DB by Protein ID:NP_001355285
Current member NCBI NM_001368356.2 NP_001355285.1 Accepted alive Link to Nucleotide Sequence:NM_001368356.2Link to Protein Sequence:NP_001355285.1Re-query CCDS DB by Nucleotide ID:NM_001368356Re-query CCDS DB by Protein ID:NP_001355285Link to BLAST:NP_001355285.1
Original member Current member NCBI NM_001368357.1 NP_001355286.1 Accepted alive Link to Nucleotide Sequence:NM_001368357.1Link to Protein Sequence:NP_001355286.1Re-query CCDS DB by Nucleotide ID:NM_001368357Re-query CCDS DB by Protein ID:NP_001355286Link to BLAST:NP_001355286.1
Original member Current member NCBI NM_001368358.1 NP_001355287.1 Accepted alive Link to Nucleotide Sequence:NM_001368358.1Link to Protein Sequence:NP_001355287.1Re-query CCDS DB by Nucleotide ID:NM_001368358Re-query CCDS DB by Protein ID:NP_001355287Link to BLAST:NP_001355287.1
Original member NCBI NM_010069.1 NP_034199.1 Updated not alive Link to Nucleotide Sequence:NM_010069.1Link to Protein Sequence:NP_034199.1Re-query CCDS DB by Nucleotide ID:NM_010069Re-query CCDS DB by Protein ID:NP_034199
Current member NCBI NM_010069.2 NP_034199.1 Accepted alive Link to Nucleotide Sequence:NM_010069.2Link to Protein Sequence:NP_034199.1Re-query CCDS DB by Nucleotide ID:NM_010069Re-query CCDS DB by Protein ID:NP_034199Link to BLAST:NP_034199.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355284.1 405 Q7TNF0 405 100% 0 0
NP_001355285.1 405 Q7TNF0 405 100% 0 0
NP_001355286.1 405 Q7TNF0 405 100% 0 0
NP_001355287.1 405 Q7TNF0 405 100% 0 0
NP_034199.1 405 Q7TNF0 405 100% 0 0

Chromosomal Locations for CCDS 21847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126848586 126848862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126849220 126849299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126849482 126849556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126849662 126849771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126850934 126851060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126851140 126851199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126851283 126851446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126851537 126851618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126851709 126851805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126851891 126852036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGAGGGGCCGCAGGGGCGATCGCATGACCATCAACATCCAGGAGCACATGGCCATCAACGTGTGCCCTG
GACCCATCAGGCCCATCCGCCAGATCTCCGACTACTTCCCTCGCAGGGGGCCAGGACCAGAGGGTGGCGG
CGGCGGCGGTGGCACGGGCTGCGGGGAAGCCCCAGCTCATCTGGCCCCTCTGGCTCTGGCCCCCCCTGCG
GCTCTCCTTGGGGCCACTACACCCGACGATGGAGCTGAGGTAGACAGCTACGACTCGGATGATACCACCG
CCCTGGGCACACTGGAATTTGACCTTCTCTATGATCAGGCTTCCTGCATGCTGCACTGTAGAATCCTCAG
GGCCAAGGGCCTCAAGCCCATGGATTTCAATGGCCTGGCTGACCCCTATGTAAAGCTTCACCTCCTGCCA
GGAGCCTGCAAGGCCAATAAGCTAAAAACCAAGACACAGAGGAACACACTGAACCCTGTGTGGAATGAGG
AGCTGACGTACAGCGGGATCACGGATGATGACATCACCCACAAGGTGCTCAGGATCTCTGTCTGTGATGA
GGACAAGCTGAGCCACAATGAATTCATTGGGGAGATCCGAGTGCCCCTCCGCCGCCTCAAGCCTTCACAG
AAGAAGCATTTTAACATCTGCCTTGAGCGCCAGGTCCCGCTTCCTTCACCCTCTTCAATGTCTGCGGCGC
TGAGGGGCATATCCTGTTACCTGAAGGAGCTGGAGCAGGCAGAGCAGGGACCTGGGCTGCTGGAAGAGCG
CGGGCGCATCCTGCTGAGCCTCAGCTACAGCTCTCGGCGGCATGGGCTGCTGGTGGGCATTGTTCGCTGT
GCGCACCTGGCTGCAATGGATGTTAACGGCTACTCTGACCCTTATGTGAAGACGTACTTGAGACCAGATG
TGGATAAGAAATCCAAGCACAAAACATGTGTAAAGAAGAAGACACTAAATCCGGAATTTAATGAGGAATT
CTTCTATGAGATTGAACTCTCCACTCTGGCCACTAAGACCCTGGAGGTCACAGTCTGGGACTACGACATT
GGCAAATCCAATGACTTCATAGGTGGTGTGTCTCTGGGGCCAGGAGCCCGGGGAGAGGCCCAGAAACACT
GGAATGACTGTCTACATCAGCCGGACACAGCCCTGGAGCGCTGGCATACTCTGACCAGCGAGCTGCCCCC
TGCAGCAGGGGCTTACCCTTTGGCTTGA

Translation (405 aa):
MRGRRGDRMTINIQEHMAINVCPGPIRPIRQISDYFPRRGPGPEGGGGGGGTGCGEAPAHLAPLALAPPA
ALLGATTPDDGAEVDSYDSDDTTALGTLEFDLLYDQASCMLHCRILRAKGLKPMDFNGLADPYVKLHLLP
GACKANKLKTKTQRNTLNPVWNEELTYSGITDDDITHKVLRISVCDEDKLSHNEFIGEIRVPLRRLKPSQ
KKHFNICLERQVPLPSPSSMSAALRGISCYLKELEQAEQGPGLLEERGRILLSLSYSSRRHGLLVGIVRC
AHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFFYEIELSTLATKTLEVTVWDYDI
GKSNDFIGGVSLGPGARGEAQKHWNDCLHQPDTALERWHTLTSELPPAAGAYPLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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