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Report for CCDS16551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16551.1 Public Mus musculus 2 Slc12a6 23 108 98 CCDS HistoryNCBI Gene:107723Re-query CCDS DB by CCDS ID:16551.1Re-query CCDS DB by GeneID:107723See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16551.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028549.13 ENSMUSP00000028549.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028549.13Link to Ensembl Protein Viewer:ENSMUSP00000028549.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028549Re-query CCDS DB by Protein ID:ENSMUSP00000028549
Original member Current member NCBI NM_133649.2 NP_598410.2 Accepted alive Link to Nucleotide Sequence:NM_133649.2Link to Protein Sequence:NP_598410.2Re-query CCDS DB by Nucleotide ID:NM_133649Re-query CCDS DB by Protein ID:NP_598410Link to BLAST:NP_598410.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598410.2 1150 Q924N4-1 1150 100% 0 0

Chromosomal Locations for CCDS 16551.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112266822 112267092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112316241 112316285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112333383 112333477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112334369 112334500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112335776 112335922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112337358 112337412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112337859 112337989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112339246 112339487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112341831 112342045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112343829 112343987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112344139 112344237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112344488 112344545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112346899 112347073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112347317 112347435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112349276 112349374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112351279 112351398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112352444 112352548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112352892 112353060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112354174 112354369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112354975 112355144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112356460 112356591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112357484 112357591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112357768 112357952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112358506 112358639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112360416 112360507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3453 nt):
ATGCATCCACCAGAAGCCACCACCAAGATGTCCTCAGTTCGGTTCATGGTGACACCAACTAAGATTGATG
ACATTCCAGGTTTGTCAGACACCAGCCCGGACCTCAGCTCTCGGTCTAGTTCTCGAGTAAGATTTAGCTC
CCGAGAAAGTGTGCCAGAAACAAGCCGTAGTGAGCCTATGAGCGAACTGTCTGGGGCTACTACTTCTCTG
GCAACTGTTGCCCTAGATCCTTCCAGTGACCGGACTTCTAATCCCCAGGATGTTACGGAGGACCCGAGTC
AGAACTCCATCACAGGGGAGCACAGCCAGCTGTTAGATGACGGCCATAAAAAAGCCCGAAATGCTTATCT
CAATAATTCCAACTATGAAGAAGGAGACGAATATTTTGATAAAAATTTGGCACTCTTTGAGGAAGAAATG
GACACCAGACCAAAGGTGTCTTCTCTCCTCAACCGCATGGCCAACTATACAAATCTGACACAAGGAGCAA
AGGAACATGAAGAGGCAGAGAACATCACTGAAGGGAAAAAGAAGCCTACCAAGAGCCCCCAAATGGGTAC
TTTCATGGGTGTCTACCTCCCATGTCTACAGAACATCTTTGGAGTGATCCTCTTCCTGCGTCTTACCTGG
GTAGTGGGAACAGCTGGAATCCTTCAGGCCTTTGCAATTGTCCTCATCTGCTGCTGCTGTACAATGTTAA
CTGCCATCTCCATGAGCGCCATCGCCACTAACGGAGTGGTGCCAGCTGGGGGCTCATACTTCATGATTTC
CAGAGCCCTGGGCCCAGAGTTTGGCGGGGCTGTAGGCCTCTGCTTTTATCTTGGCACCACATTTGCAGCA
GCCATGTATATTCTTGGTGCCATTGAAATCTTTCTGGTATACATTGTCCCCCGAGCTGCCATCTTTCGGA
GTGACGATGCACTCAAGGAGTCAGCAGCTATGCTGAACAACATGCGCGTCTATGGTACAGCCTTCTTGGT
CCTCATGGTCTTGGTGGTATTCATCGGCGTACGCTATGTGAATAAGTTTGCCTCACTCTTCCTGGCCTGT
GTAATTGTGTCGATCTTGGCTATCTATGCTGGTGCCATCAAGTCTTCCTTTGCTCCACCACACTTCCCGG
TCTGTATGCTGGGCAACCGTACCCTGTCATCAAGACACCTTGACATTTGCTCTAAGACCAAGGAGGTTGA
CAACATGACAGTACCATCAAAGTTATGGGGATTCTTCTGCAACTCGAGTCAGTTCTTTAATGCCACCTGT
GATGAGTACTTTGTTCACAATAACGTCATCTCAATCCAAGGCATTCCAGGGTTGGCTAGTGGTATCATTA
CTGAAAATCTTTGGAGTAATTATTTACCAAAGGGTGAGATAATTGAAAAGCCATCAGCCAAGTCATCTGA
TGTCTTAGGCAACTTAAACCATGAATATGTTCTTGCTGATATCACCACCTCCTTCACTCTGCTGGTGGGG
ATCTTCTTTCCCTCGGTCACAGGTATCATGGCTGGGTCAAACAGATCTGGAGATCTGAAAGATGCCCAGA
AGTCTATTCCCATTGGGACCATCCTTGCCATCCTGACCACATCCTTTGTGTATTTAAGCAATGTTGTCCT
TTTTGGTGCATGTATTGAAGGAGTCGTTCTCAGAGACAAATTTGGGGATGCTGTAAAAGGGAATTTGGTT
GTAGGCACCTTATCCTGGCCATCCCCGTGGGTGATCGTTATTGGCTCCTTCTTTTCAACATGTGGGGCTG
GGCTGCAGAGCCTCACAGGTGCGCCTCGGCTGCTGCAGGCTATCGCCAAGGATAACATCATACCTTTCCT
TAGGGTTTTTGGTCACAGCAAAGCTAATGGGGAACCTACCTGGGCTTTACTTCTAACTGCTGCCATAGCA
GAGCTGGGAATTCTCATCGCCTCCCTGGATCTCGTGGCCCCAATTCTTTCCATGTTTTTTCTCATGTGTT
ACCTCTTTGTGAACTTGGCTTGTGCCTTGCAAACATTGCTGCGAACCCCCAACTGGAGGCCTCGATTCCG
CTATTATCACTGGGCCCTCTCTTTCATGGGAATGAGTATCTGTCTAGCTCTGATGTTCATTTCTTCTTGG
TATTATGCCATTGTAGCTATGGTAATAGCTGGCATGATCTACAAGTACATTGAATATCAAGGGGCTGAGA
AAGAATGGGGGGATGGTATCCGTGGGCTGTCGCTCAGTGCAGCCCGCTTCGCTTTGCTCCGTCTAGAGGA
AGGACCTCCTCACACTAAAAACTGGAGGCCTCAGCTGCTCGTCCTACTGAAGCTGGATGAAGATTTACAC
GTCAAGCACCCTCGCCTCCTCACCTTTGCCTCCCAGCTCAAGGCAGGAAAGGGACTCACGATTGTGGGCT
CTGTCATCGTGGGGAACTTCTTGGAGAACTATGGTGACGCGCTCGCGGCAGAGCAGACCATTAAGCACCT
AATGGAGGCAGAAAAGGTAAAAGGATTCTGCCAATTGGTGGTGGCTGCCAAGCTGAAAGAGGGCATTTCA
CACCTCATCCAGTCCTGTGGCCTCGGAGGCATGAAACACAACACAGTGGTGATGGGCTGGCCCAATGGCT
GGCGTCAGAGTGAAGATGCTCGCGCTTGGAAGACTTTCATTGGCACAGTACGAGTGACAACTGCTGCCCA
TCTAGCCCTGCTGGTGGCTAAAAATGTCTCCTTCTTTCCCAGCAATGTGGAGCAGTTTTCTGAGGGCAAC
ATTGATGTGTGGTGGATTGTGCATGATGGGGGCATGCTCATGCTATTACCGTTCCTGCTGAAACAGCACA
AGGTTTGGCGGAAATGCAGCATACGGATCTTCACAGTAGCCCAACTAGAAGACAACAGTATCCAGATGAA
GAAGGATCTGGCCACCTTTCTGTACCACCTGCGCATTGAGGCAGAAGTGGAAGTGGTGGAGATGCACGAC
AGTGACATATCTGCCTATACATATGAGCGCACCCTGATGATGGAGCAGAGGTCCCAGATGCTTCGGCATA
TGCGGCTGTCCAAAACAGAGCGAGACAGGGAGGCACAGCTGGTGAAAGATCGAAACTCAATGCTACGCTT
GACCAGCATTGGCTCTGATGAGGACGAAGAGACAGAAACGTACCAGGAGAAGGTGCACATGACTTGGACC
AAGGATAAATACATGGCATCCCGGGGGCAAAAGGTCAAGTCAATGGAAGGATTCCAGGACCTACTTAATA
TGCGTCCGGACCAGTCCAACGTGAGACGGATGCATACAGCAGTGAAGCTCAATGAAGTTATAGTCAACAA
GTCTCATGAAGCAAAGCTGGTTTTGTTGAATATGCCAGGACCACCCCGGAACCCTGAAGGTGATGAAAAC
TACATGGAATTTCTAGAAGTGCTCACTGAGGGATTAGAACGAGTCCTTCTTGTCCGGGGTGGTGGCAGTG
AGGTCATCACCATTTACTCATAA

Translation (1150 aa):
MHPPEATTKMSSVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVRFSSRESVPETSRSEPMSELSGATTSL
ATVALDPSSDRTSNPQDVTEDPSQNSITGEHSQLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEM
DTRPKVSSLLNRMANYTNLTQGAKEHEEAENITEGKKKPTKSPQMGTFMGVYLPCLQNIFGVILFLRLTW
VVGTAGILQAFAIVLICCCCTMLTAISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLGTTFAA
AMYILGAIEIFLVYIVPRAAIFRSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLAC
VIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHLDICSKTKEVDNMTVPSKLWGFFCNSSQFFNATC
DEYFVHNNVISIQGIPGLASGIITENLWSNYLPKGEIIEKPSAKSSDVLGNLNHEYVLADITTSFTLLVG
IFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGACIEGVVLRDKFGDAVKGNLV
VGTLSWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAAIA
ELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSW
YYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPHTKNWRPQLLVLLKLDEDLH
VKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGDALAAEQTIKHLMEAEKVKGFCQLVVAAKLKEGIS
HLIQSCGLGGMKHNTVVMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNVSFFPSNVEQFSEGN
IDVWWIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVEVVEMHD
SDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSIGSDEDEETETYQEKVHMTWT
KDKYMASRGQKVKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVIVNKSHEAKLVLLNMPGPPRNPEGDEN
YMEFLEVLTEGLERVLLVRGGGSEVITIYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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