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Report for CCDS40221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40221.1 Public Mus musculus 8 Spaca7b 23 108 98 CCDS HistoryNCBI Gene:76413Re-query CCDS DB by CCDS ID:40221.1Re-query CCDS DB by GeneID:76413See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033906.10 ENSMUSP00000033906.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033906.10Link to Ensembl Protein Viewer:ENSMUSP00000033906.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033906Re-query CCDS DB by Protein ID:ENSMUSP00000033906
Original member Current member NCBI NM_024271.2 NP_077233.1 Accepted alive Link to Nucleotide Sequence:NM_024271.2Link to Protein Sequence:NP_077233.1Re-query CCDS DB by Nucleotide ID:NM_024271Re-query CCDS DB by Protein ID:NP_077233Link to BLAST:NP_077233.1

Chromosomal Locations for CCDS 40221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11655605 11655681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11656109 11656189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11661672 11661755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11662590 11662691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11665036 11665098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11678576 11678669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGACAGCGAATAGAGGAGCAATGACCTTCTTATCTGTCTTCCTGCTGTGCTGTTGGCAAGACGTACAGC
CCTGGCCGAATAGAGAGCTTTCAGGTTCAAGTGGTAAGCAATGGCCAAATTTAGAAACTCTGGATGATGA
CATAGCTACAGTGTTTGATGAAATTCTAGTCCGGGATATTCTGGAGCCAGGGAAAGCACCATATTTTGAA
AATCAAAGCCCATCAACAACTTCACAACAAAAAACAACGAAGGAAAAAGAAGTCCACACAAAAGAACCCA
TACCTTCTAAGACATATCAGAAGCAGTCATCTTCTGGGACCATGCACACCCCTTCCTTTGACGATAAGCA
GAAAGAAATACTTTTTCAGCTAAGAAGCCTTGAAGCTCTGGAGAAAATGATTGACAAGATTCGAAGAGCT
ATTGAAACTAAGCTCAAGAGAAGACAGAAGCTCCAGCAAAGTAGAAGCAGTCAACTCCTGGGGAAGCCAA
TCCAGCCCTAA

Translation (166 aa):
MTANRGAMTFLSVFLLCCWQDVQPWPNRELSGSSGKQWPNLETLDDDIATVFDEILVRDILEPGKAPYFE
NQSPSTTSQQKTTKEKEVHTKEPIPSKTYQKQSSSGTMHTPSFDDKQKEILFQLRSLEALEKMIDKIRRA
IETKLKRRQKLQQSRSSQLLGKPIQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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