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Report for CCDS22581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22581.1 Public Mus musculus 8 Car7 23 108 98 CCDS HistoryNCBI Gene:12354Re-query CCDS DB by CCDS ID:22581.1Re-query CCDS DB by GeneID:12354See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056051.10 ENSMUSP00000052136.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056051.10Link to Ensembl Protein Viewer:ENSMUSP00000052136.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000056051Re-query CCDS DB by Protein ID:ENSMUSP00000052136
Original member Current member NCBI NM_053070.3 NP_444300.1 Accepted alive Link to Nucleotide Sequence:NM_053070.3Link to Protein Sequence:NP_444300.1Re-query CCDS DB by Nucleotide ID:NM_053070Re-query CCDS DB by Protein ID:NP_444300Link to BLAST:NP_444300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444300.1 264 Q9ERQ8 264 100% 0 0

Chromosomal Locations for CCDS 22581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104540886 104540925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104543410 104543607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104547687 104547805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104548186 104548281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104548385 104548447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104548937 104549092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104549557 104549679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGACCGGCCACCACTGTTGGGGCTACGGCCAGGACGACGGCCCTTCAAATTGGCACAAGCTGTATCCCA
TTGCCCAGGGAGACCGCCAGTCACCCATCAATATCATATCCAGCCAGGCTGTGTACTCGCCCAGCCTGCA
GCCACTGGAACTTTTCTATGAGGCCTGCATGTCCCTCAGCATCACCAACAATGGCCACTCTGTCCAGGTG
GACTTCAATGACAGTGATGACAGAACCGTGGTGTCTGGGGGCCCCCTGGAAGGGCCCTATCGTCTCAAGC
AGCTCCACTTCCACTGGGGCAAGAAGCGCGACATGGGCTCAGAGCACACAGTGGACGGCAAGTCCTTCCC
CAGCGAGCTACATCTGGTTCACTGGAACGCCAAGAAGTACAGCACTTTTGGGGAGGCGGCTGCAGCCCCT
GATGGCCTGGCTGTGGTTGGTGTCTTCCTGGAGACAGGAGATGAGCACCCAAGCATGAACCGCCTGACAG
ACGCCCTCTACATGGTTCGATTTAAGGACACCAAGGCCCAGTTCAGCTGCTTCAACCCCAAGTGCCTGCT
GCCCACCAGCCGACACTACTGGACCTATCCTGGCTCCCTGACCACACCCCCACTCAGTGAGAGTGTCACT
TGGATTGTGCTTCGGGAGCCCATCAGGATCTCCGAGAGGCAGATGGAGAAATTCCGGAGCCTGCTTTTCA
CCTCAGAGGATGATGAGAGGATCCATATGGTGGACAACTTCCGGCCACCACAGCCGCTGAAGGGCCGAGT
GGTCAAAGCATCCTTCCAGGCCTGA

Translation (264 aa):
MTGHHCWGYGQDDGPSNWHKLYPIAQGDRQSPINIISSQAVYSPSLQPLELFYEACMSLSITNNGHSVQV
DFNDSDDRTVVSGGPLEGPYRLKQLHFHWGKKRDMGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAAAAP
DGLAVVGVFLETGDEHPSMNRLTDALYMVRFKDTKAQFSCFNPKCLLPTSRHYWTYPGSLTTPPLSESVT
WIVLREPIRISERQMEKFRSLLFTSEDDERIHMVDNFRPPQPLKGRVVKASFQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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