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Report for CCDS27275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27275.1 Public Mus musculus 14 Htr2a 23 108 98 CCDS HistoryNCBI Gene:15558Re-query CCDS DB by CCDS ID:27275.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036653.4 ENSMUSP00000047774.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036653.4Link to Ensembl Protein Viewer:ENSMUSP00000047774.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000036653Re-query CCDS DB by Protein ID:ENSMUSP00000047774
Original member Current member NCBI NM_172812.3 NP_766400.1 Accepted alive Link to Nucleotide Sequence:NM_172812.3Link to Protein Sequence:NP_766400.1Re-query CCDS DB by Nucleotide ID:NM_172812Re-query CCDS DB by Protein ID:NP_766400Link to BLAST:NP_766400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766400.1 471 P35363 471 100% 0 0

Chromosomal Locations for CCDS 27275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 74641933 74642344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74644988 74645188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74705595 74706397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGAAATTCTCTGTGAAGACAATATCTCCCTGAGCTCAATTCCAAACTCCTTAATGCAATTAGGTGACG
ACTCGAGGCTCTACCCTAATGACTTCAACTCCAGGGATGCTAACACTTCCGAAGCCTCGAACTGGACAAT
TGATGCTGAAAACAGAACCAACCTCTCCTGCGAAGGGTACCTCCCACCGACATGCCTCTCCATTCTTCAT
CTCCAGGAAAAAAACTGGTCTGCTTTATTGACAACTGTCGTGATTATTCTCACCATTGCGGGAAACATAC
TGGTCATCATGGCAGTGTCCCTAGAGAAAAAGCTGCAGAATGCCACCAACTATTTCCTGATGTCACTTGC
CATAGCTGATATGCTGCTGGGTTTCCTTGTCATGCCCGTGTCCATGTTAACCATCCTGTATGGGTACCGG
TGGCCTTTGCCCAGCAAGCTCTGTGCCGTCTGGATTTACCTGGATGTGCTCTTCTCCACGGCGTCCATCA
TGCACCTCTGCGCCATCTCCCTGGACCGCTACGTGGCTATCCAGAACCCCATTCACCATAGCCGCTTCAA
CTCCAGAACCAAAGCCTTCCTGAAAATCATTGCGGTGTGGACCATATCCGTAGGTATATCCATGCCAATC
CCAGTCTTCGGGCTACAGGATGATTCGAAGGTCTTTAAGGAAGGGAGCTGCCTGCTCGCCGATGACAACT
TTGTCCTCATAGGCTCTTTTGTGGCATTTTTCATCCCCCTAACCATCATGGTGATCACCTACTTCCTGAC
TATCAAGTCACTTCAGAAAGAAGCCACCTTGTGTGTGAGTGACCTCAGCACTCGGGCCAAATTATCCTCC
TTCAGCTTCCTCCCTCAGAGTTCTCTGTCATCAGAAAAGCTCTTCCAGCGGTCCATCCACAGAGAGCCAG
GCTCCTACGCAGGCCGAAGGACGATGCAGTCCATCAGCAACGAGCAAAAAGCATGCAAGGTGCTGGGCAT
CGTGTTCTTTCTGTTTGTTGTAATGTGGTGCCCATTCTTCATCACCAATATCATGGCCGTCATCTGCAAA
GAATCCTGCAATGAAAATGTCATTGGAGCCCTGCTCAATGTGTTTGTCTGGATTGGTTATCTCTCCTCAG
CCGTCAACCCACTGGTATATACGTTGTTCAATAAAACTTATAGGTCCGCCTTCTCACGGTACATTCAGTG
CCAGTACAAGGAGAACAGAAAGCCGCTGCAGTTAATTTTAGTGAACACTATACCAACATTGGCCTACAAG
TCTAGTCAGCTCCAGGTGGGACAAAAAAAGAACTCACAGGAAGATGCTGAGCCGACAGCTAATGACTGCT
CCATGGTTACACTAGGGAACCAACACTCGGAAGAGATGTGTACAGACAATATTGAAACCGTGAATGAAAA
GGTTAGCTGTGTGTGA

Translation (471 aa):
MEILCEDNISLSSIPNSLMQLGDDSRLYPNDFNSRDANTSEASNWTIDAENRTNLSCEGYLPPTCLSILH
LQEKNWSALLTTVVIILTIAGNILVIMAVSLEKKLQNATNYFLMSLAIADMLLGFLVMPVSMLTILYGYR
WPLPSKLCAVWIYLDVLFSTASIMHLCAISLDRYVAIQNPIHHSRFNSRTKAFLKIIAVWTISVGISMPI
PVFGLQDDSKVFKEGSCLLADDNFVLIGSFVAFFIPLTIMVITYFLTIKSLQKEATLCVSDLSTRAKLSS
FSFLPQSSLSSEKLFQRSIHREPGSYAGRRTMQSISNEQKACKVLGIVFFLFVVMWCPFFITNIMAVICK
ESCNENVIGALLNVFVWIGYLSSAVNPLVYTLFNKTYRSAFSRYIQCQYKENRKPLQLILVNTIPTLAYK
SSQLQVGQKKNSQEDAEPTANDCSMVTLGNQHSEEMCTDNIETVNEKVSCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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