NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40460.1 Public Mus musculus 8 Hsd11b2 23 108 98 CCDS HistoryNCBI Gene:15484Re-query CCDS DB by CCDS ID:40460.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034363.6 ENSMUSP00000034363.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034363.6Link to Ensembl Protein Viewer:ENSMUSP00000034363.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034363Re-query CCDS DB by Protein ID:ENSMUSP00000034363
Original member Current member NCBI NM_008289.2 NP_032315.2 Accepted alive Link to Nucleotide Sequence:NM_008289.2Link to Protein Sequence:NP_032315.2Re-query CCDS DB by Nucleotide ID:NM_008289Re-query CCDS DB by Protein ID:NP_032315Link to BLAST:NP_032315.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032315.2 386 P51661 386 100% 0 0

Chromosomal Locations for CCDS 40460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105518865 105519129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105522143 105522355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105522473 105522658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105522765 105522902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105523061 105523419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGAGCGCTGGCCTTGGCCGTCGGGCGGCGCCTGGCTGCTGGTGGCTGCCCGCGCGCTGCTGCAGCTGC
TGCGCTCAGACCTGCGTCTGGGCCGCCCGTTGTTGGCGGCACTGGCCCTGCTGGCTGCTCTCGACTGGCT
GTGCCAGCGCCTGCTGCCCCCGCCGGCGGCACTCGTGGTGCTGGCTGGTGCTGGCTGGATCGCGTTGTCC
CGCCTAGCGCGCCCTCCTCGCCTGCCGGTGGCCACTCGCGCGGTGCTCATCACCGGTTGTGACACTGGTT
TTGGCAAGGAGACAGCTAAGAAACTGGATGCCATGGGCTTCACGGTGCTGGCCACAGTGTTGGATTTGAA
TAGCCCTGGTGCCCTAGAACTGCGTGACCTCTGTTCTCCTCGCCTGAAGCTGCTGCAGATGGATCTGACC
AAGGCAGAGGACATCAGCCGTGTTCTGGAAATCACCAAGGCCCACACGGCCAGCACTGGCCTGTGGGGTC
TGGTTAACAACGCTGGCCTCAATATCGTAGTGGCTGACGTGGAACTGTCTCCAGTGGCGACTTTCCGCAA
GTGCATGGAGGTGAACTTCTTTGGTGCACTTGAGCTGACCAAGGGCCTCCTGCCACTCTTGCGTCACTCG
AGGGGACGTATTGTGACCGTTGGCAGCCCAGCAGGAGACATGCCATACCCCTGCTTGGCAGCCTACGGCA
CCTCCAAGGCAGCAATAGCACTGCTTATGGACACATTCGGCTGTGAGCTGCTTCCCTGGGGTATCAAGGT
CAGCATTATCAAGCCTGGCTGCTTCAAGACAGATGCAGTGACTAATGTGAACCTCTGGGAGAAACGCAAG
CAACTGCTGCTGGCCAACATTCCTAGAGAGCTGCTCCAGGCCTATGGTGAAGACTACATTGAGCACGTGC
ACGGGCAGTTCCTGAATTCACTCAGAATGGCATTGCCTGACCTTAGCCCAGTTGTAGATGCCATCATCGA
TGCATTGCTGGCAGCTCAGCCACGAAGCCGCTACTACCCAGGCCGTGGCCTGGGGCTCATGTATTTCATC
CACCACTACCTGCCAGAGGGCCTGCGACGCTGCTTCCTACAGAACTTCTTTATCAATCACCTTCTGCCCC
GAGCACTGAGGCCCGGCCAACATGGCCCTGCTCCTGCTTAA

Translation (386 aa):
MERWPWPSGGAWLLVAARALLQLLRSDLRLGRPLLAALALLAALDWLCQRLLPPPAALVVLAGAGWIALS
RLARPPRLPVATRAVLITGCDTGFGKETAKKLDAMGFTVLATVLDLNSPGALELRDLCSPRLKLLQMDLT
KAEDISRVLEITKAHTASTGLWGLVNNAGLNIVVADVELSPVATFRKCMEVNFFGALELTKGLLPLLRHS
RGRIVTVGSPAGDMPYPCLAAYGTSKAAIALLMDTFGCELLPWGIKVSIIKPGCFKTDAVTNVNLWEKRK
QLLLANIPRELLQAYGEDYIEHVHGQFLNSLRMALPDLSPVVDAIIDALLAAQPRSRYYPGRGLGLMYFI
HHYLPEGLRRCFLQNFFINHLLPRALRPGQHGPAPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH