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Report for CCDS45820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45820.1 Public Homo sapiens 18 THOC1 24 110 108 CCDS HistoryNCBI Gene:9984Re-query CCDS DB by CCDS ID:45820.1Re-query CCDS DB by GeneID:9984See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45820.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261600.11 ENSP00000261600.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261600.11Link to Ensembl Protein Viewer:ENSP00000261600.6Re-query CCDS DB by Nucleotide ID:ENST00000261600Re-query CCDS DB by Protein ID:ENSP00000261600
Original member Current member NCBI NM_005131.3 NP_005122.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005131.3Link to Protein Sequence:NP_005122.2Re-query CCDS DB by Nucleotide ID:NM_005131Re-query CCDS DB by Protein ID:NP_005122Link to BLAST:NP_005122.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005122.2 657 Q96FV9-1 657 100% 0 0

Chromosomal Locations for CCDS 45820.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 214626 214921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 215429 215504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 216486 216633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 218886 218969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 223440 223505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 224084 224179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 224924 224994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 225089 225139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 225337 225403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 226801 226901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 246324 246455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 247849 247957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 252539 252612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 254273 254355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 259180 259275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 259682 259730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 260186 260304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 264026 264092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 265303 265363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 265457 265530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 267966 268019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGTCTCCGACGCCGCCGCTCTTCAGTTTGCCCGAAGCGCGGACGCGGTTTACGAAGTCTACCAGAGAGG
CCTTGAACAACAAAAACATCAAGCCATTGTTAAGTACCTTCAGCCAGGTACCTGGCAGTGAAAATGAAAA
AAAATGTACCCTTGACCAAGCTTTCAGAGGTATTCTAGAAGAAGAAATTATAAATCATTCATCATGTGAA
AACGTTTTAGCTATTATTTCTCTTGCTATTGGGGGAGTAACTGAAGGTATTTGTACCGCATCTACACCTT
TTGTATTGTTGGGAGATGTTTTGGATTGTCTTCCTTTGGATCAGTGTGACACAATATTCACTTTTGTGGA
AAAAAATGTTGCTACTTGGAAATCAAATACATTCTATTCTGCTGGGAAAAATTACTTACTACGTATGTGC
AATGATCTCCTAAGAAGATTGTCTAAATCCCAGAATACAGTCTTCTGTGGACGGATTCAGCTCTTTTTGG
CCAGGCTTTTCCCTCTGTCTGAGAAATCAGGTCTTAACTTGCAGAGTCAGTTTAATCTGGAAAATGTCAC
TGTTTTCAATACAAATGAGCAGGAAAGCACCCTGGGTCAGAAGCACACTGAAGATAGAGAAGAAGGAATG
GATGTAGAAGAAGGCGAAATGGGAGACGAGGAAGCTCCAACAACGTGCTCTATTCCAATTGATTACAACC
TGTATCGAAAATTCTGGTCACTTCAGGATTACTTCAGGAACCCTGTGCAATGCTATGAGAAGATTTCATG
GAAAACTTTTCTCAAGTATTCTGAAGAAGTTTTAGCTGTTTTTAAGAGTTATAAATTAGATGATACTCAG
GCCTCAAGAAAAAAGATGGAAGAATTGAAAACAGGAGGAGAACATGTATATTTTGCAAAATTTTTAACAA
GTGAAAAGCTGATGGATTTACAACTGAGTGACAGTAACTTTCGTCGACACATCCTGTTGCAGTATCTCAT
TTTATTCCAATATCTCAAGGGGCAGGTCAAATTCAAAAGTTCAAACTATGTTTTAACTGATGAGCAATCA
CTTTGGATTGAAGATACTACAAAATCAGTTTATCAACTACTATCTGAAAACCCCCCCGATGGAGAAAGAT
TTTCAAAGATGGTAGAGCATATATTAAACACTGAAGAAAACTGGAACTCGTGGAAAAATGAAGGTTGCCC
AAGTTTTGTGAAAGAAAGAACATCAGATACCAAACCTACGAGAATAATTCGGAAGAGAACAGCACCCGAG
GACTTCCTAGGGAAAGGACCCACCAAAAAAATTCTGATGGGAAATGAGGAGTTAACAAGGCTTTGGAATC
TTTGCCCTGATAATATGGAAGCCTGTAAATCAGAGACAAGGGAACACATGCCCACTTTGGAGGAATTCTT
TGAAGAAGCCATTGAACAGGCAGACCCTGAAAATATGGTGGAAAATGAATATAAGGCTGTGAACAATTCA
AATTATGGTTGGAGAGCCCTGAGACTATTAGCACGGAGAAGCCCTCACTTCTTCCAGCCAACCAACCAGC
AGTTTAAAAGTTTACCAGAATATCTTGAAAATATGGTAATAAAGCTAGCCAAGGAATTACCGCCTCCTTC
TGAAGAAATAAAAACAGGTGAGGATGAAGATGAGGAAGATAATGATGCTCTACTGAAGGAAAATGAAAGT
CCTGATGTTCGGCGAGACAAACCTGTAACAGGAGAACAAATAGAGGTATTTGCCAACAAGCTGGGTGAAC
AATGGAAGATTCTGGCTCCCTACTTGGAAATGAAAGACTCAGAAATTAGGCAGATTGAGTGTGACAGTGA
AGACATGAAGATGAGAGCTAAGCAGCTCCTGGTTGCCTGGCAAGATCAAGAGGGAGTTCATGCAACACCT
GAGAATCTGATTAATGCACTGAATAAGTCTGGATTAAGTGACCTTGCAGAAAGTCTAACTAATGACAATG
AGACAAATAGTTAG

Translation (657 aa):
MSPTPPLFSLPEARTRFTKSTREALNNKNIKPLLSTFSQVPGSENEKKCTLDQAFRGILEEEIINHSSCE
NVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMC
NDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEQESTLGQKHTEDREEGM
DVEEGEMGDEEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQ
ASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQS
LWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAPE
DFLGKGPTKKILMGNEELTRLWNLCPDNMEACKSETREHMPTLEEFFEEAIEQADPENMVENEYKAVNNS
NYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIKTGEDEDEEDNDALLKENES
PDVRRDKPVTGEQIEVFANKLGEQWKILAPYLEMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATP
ENLINALNKSGLSDLAESLTNDNETNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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