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Report for CCDS8484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8484.1 Public Homo sapiens 11 PRDM10 24 110 108 CCDS HistoryNCBI Gene:56980Re-query CCDS DB by CCDS ID:8484.1Re-query CCDS DB by GeneID:56980See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8484.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360871.8 ENSP00000354118.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360871.8Link to Ensembl Protein Viewer:ENSP00000354118.3Re-query CCDS DB by Nucleotide ID:ENST00000360871Re-query CCDS DB by Protein ID:ENSP00000354118
Original member Current member NCBI NM_199437.2 NP_955469.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199437.2Link to Protein Sequence:NP_955469.1Re-query CCDS DB by Nucleotide ID:NM_199437Re-query CCDS DB by Protein ID:NP_955469Link to BLAST:NP_955469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955469.1 1156 Q9NQV6-4 1156 100% 0 0

Chromosomal Locations for CCDS 8484.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 129902313 129902516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129905638 129905741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129910476 129910656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129912085 129912225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129914704 129915018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129915660 129915860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129917127 129917237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129918539 129918718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129923248 129923403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129924882 129925229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129931016 129931258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129932102 129932231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129935101 129935218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129937598 129937670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129942426 129942629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129944771 129945012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129947145 129947370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129955512 129955571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129957746 129957910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129960896 129960964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3471 nt):
ATGGATTCCAAAGATGAAAGCTCGCATGTGTGGCCGACATCTGCAGAGCATGAACAGAATGCCGCACAGG
TGCACTTTGTTCCGGACACAGGAACAGTGGCTCAGATTGTCTATACCGATGACCAGGTTCGCCCCCCACA
GCAGGTGGTGTACACGGCAGATGGTGCCTCCTACACATCAGTGGATGGTCCAGAGCACACGCTGGTGTAC
ATCCACCCGGTGGAAGCTGCACAGACTCTGTTTACAGACCCCGGCCAGGTAGCTTATGTCCAACAGGATG
CTACAGCTCAGCAGGCCTCATTGCCAGTTCATAACCAGGTGCTGCCTTCCATCGAGAGTGTAGATGGGTC
CGACCCTTTGGCAACTCTGCAGACCCCTCTAGGCAGACTGGAGGCCAAAGAGGAAGAGGATGAGGATGAG
GACGAGGACACTGAGGAAGATGAGGAAGAAGACGGTGAGGACACGGATCTGGATGACTGGGAGCCAGACC
CGCCCCGGCCCTTCGACCCACACGACTTGTGGTGTGAGGAGTGCAATAACGCGCATGCTTCAGTGTGTCC
GAAGCACGGCCCCTTGCACCCGATCCCCAACCGGCCGGTGCTCACCCGGGCCAGGGCGAGCCTCCCCCTG
GTGCTCTACATAGACAGGTTTCTGGGCGGGGTGTTCTCCAAGCGGCGCATCCCCAAGCGCACCCAGTTTG
GCCCCGTGGAGGGGCCTCTCGTCAGGGGCTCGGAGCTGAAAGACTGTTACATTCACCTCAAGGTTTCTCT
TGATAAAGGGGACAGGAAAGAAAGGGATTTACATGAAGACCTATGGTTTGAGTTGTCTGATGAGACGCTT
TGTAACTGGATGATGTTTGTACGGCCAGCCCAGAATCACCTGGAGCAGAACCTGGTGGCTTACCAGTATG
GCCACCATGTGTATTATACAACCATAAAAAATGTGGAGCCCAAGCAGGAACTGAAGGTGTGGTATGCCGC
ATCCTATGCTGAGTTCGTGAACCAGAAAATTCATGACATTTCTGAGGAAGAAAGGAAAGTTCTTCGAGAG
CAAGAGAAGAATTGGCCCTGCTATGAATGTAACCGCCGATTTATAAGCTCGGAGCAGTTGCAACAGCATC
TCAATTCTCATGATGAGAAACTAGATGTGTTTAGCAGAACAAGAGGCAGAGGAAGGGGACGAGGCAAGAG
GCGATTCGGTCCAGGTCGACGGCCGGGGCGTCCTCCAAAATTTATCCGCCTGGAAATCACCAGCGAAAAT
GGGGAAAAGAGTGACGATGGGACACAGGACTTGCTACATTTTCCCACAAAGGAGCAATTTGATGAGGCTG
AACCAGCCACTCTGAATGGGCTGGATCAACCAGAACAGACCACTATCCCAATCCCTCAGCTGCCACAGGA
AACCCAGTCTTCCCTGGAACATGAACCAGAAACTCACACCCTGCACCTGCAGCCGCAGCATGAAGAGAGC
GTGGTGCCCACCCAGAGCACGCTGACAGCCGACGACATGCGCAGAGCCAAGCGCATCCGAAATGCAGCTC
TTCAGCATCTGTTTATTCGGAAGTCCTTCCGGCCTTTTAAATGCTTGCAGTGTGGGAAGGCCTTCCGGGA
AAAGGACAAACTGGACCAGCACTTACGCTTCCATGGGCGGGAGGGGAACTGCCCACTGACCTGTGATCTC
TGTAACAAGGGCTTCATCAGCAGCACATCCTTGGAGAGCCACATGAAGCTCCACTCAGACCAGAAGACTT
ACTCTTGCATTTTTTGCCCAGAATCCTTTGACCGCCTTGATTTGTTGAAAGATCATGTGGCCATTCATAT
CAATGATGGCTACTTCACCTGCCCAACTTGTAAGAAACGGTTCCCAGATTTTATCCAGGTGAAAAAACAC
GTGCGCAGCTTCCACTCAGAAAAGATCTACCAGTGCACAGAGTGTGACAAGGCCTTCTGTCGCCCCGATA
AACTGCGACTCCACATGCTCCGGCATTCGGACCGCAAAGACTTCCTGTGTTCCACCTGTGGGAAGCAATT
TAAGCGAAAAGACAAACTACGGGAACACATGCAGAGGATGCATAATCCTGAGAGGGAGGCCAAGAAAGCC
GACCGCATCAGCCGCTCCAAGACGTTCAAGCCCCGCATCACGTCCACAGACTACGACAGCTTCACGTTCA
AGTGCCGCCTGTGCATGATGGGCTTCCGGCGGCGCGGCATGCTGGTAAATCACTTATCGAAGAGACACCC
AGACATGAAGATAGAAGAGGTGCCAGAGTTAACTCTACCCATCATAAAACCCAATCGTGATTACTTTTGT
CAGTATTGCGATAAGGTTTATAAAAGTGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCACCCAGGAG
CAGAGCTCCCACCGAGCATTCGGAAGCTCCGACCCGCTGGTCCTGGAGAGCCAGACCCCATGCTGAGCAC
ACACACCCAGCTGACGGGCACCATCGCCACCCCTCCCGTCTGCTGTCCCCACTGCTCCAAGCAGTACAGC
AGCAAGACCAAGATGGTCCAGCACATTCGAAAGAAGCATCCAGAGTTCGCCCAGCTCTCCAACACCATAC
ACACACCACTGACGACAGCTGTGATCAGTGCCACCCCAGCGGTTTTGACTACAGACAGCGCCACTGGAGA
GACTGTGGTGACGACGGACCTGCTCACCCAAGCAATGACAGAACTGTCCCAGACCTTAACGACAGACTAC
CGAACGCCACAAGGGGATTACCAGAGAATTCAGTACATCCCTGTGTCGCAGTCGGCGTCTGGCCTCCAGC
AGCCTCAGCACATACAGCTGCAAGTGGTTCAAGTGGCCTCGGCCACTTCCCCTCACCAGTCACAGCAGTC
CACTGTGGATGTTGGCCAGCTCCATGATCCTCAGCCCTACCCCCAGCACGCCATCCAGGTGCAGCACATC
CAGGTCAGCGAGCCTACCGCCTCGGCCCCGTCCTCCGCCCAGGTATCTGGGCAGCCGTTGAGTCCCTCAG
CCCAGCAGGCTCAGCAGGGGCTCAGCCCCTCCCACATCCAGGGCAGTTCTTCCACACAGGGGCAGGCTCT
GCAGCAGCAGCAGCAGCAGCAGCAGAATTCCTCTGTGCAGCACACGTACCTGCCCAGTGCTTGGAATTCC
TTCCGTGGCTATTCATCTGAGATTCAAATGATGACGCTTCCTCCGGGTCAGTTTGTGATTACAGACAGTG
GTGTGGCAACTCCAGTTACTACTGGCCAGGTGAAGGCGGTTACTTCGGGTCATTATGTGTTATCAGAAAG
TCAATCAGAATTGGAAGAAAAGCAAACTTCTGCCCTCTCTGGTGGAGTCCAGGTCGAGCCACCTGCACAC
AGTGACTCCCTGGACCCCCAGACCAACAGCCAACAGCAGACCACACAGTACATCATCACCACCACCACCA
ACGGGAACGGAAGCAGCGAAGTGCATATCACCAAACCATGA

Translation (1156 aa):
MDSKDESSHVWPTSAEHEQNAAQVHFVPDTGTVAQIVYTDDQVRPPQQVVYTADGASYTSVDGPEHTLVY
IHPVEAAQTLFTDPGQVAYVQQDATAQQASLPVHNQVLPSIESVDGSDPLATLQTPLGRLEAKEEEDEDE
DEDTEEDEEEDGEDTDLDDWEPDPPRPFDPHDLWCEECNNAHASVCPKHGPLHPIPNRPVLTRARASLPL
VLYIDRFLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWFELSDETL
CNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFVNQKIHDISEEERKVLRE
QEKNWPCYECNRRFISSEQLQQHLNSHDEKLDVFSRTRGRGRGRGKRRFGPGRRPGRPPKFIRLEITSEN
GEKSDDGTQDLLHFPTKEQFDEAEPATLNGLDQPEQTTIPIPQLPQETQSSLEHEPETHTLHLQPQHEES
VVPTQSTLTADDMRRAKRIRNAALQHLFIRKSFRPFKCLQCGKAFREKDKLDQHLRFHGREGNCPLTCDL
CNKGFISSTSLESHMKLHSDQKTYSCIFCPESFDRLDLLKDHVAIHINDGYFTCPTCKKRFPDFIQVKKH
VRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMHNPEREAKKA
DRISRSKTFKPRITSTDYDSFTFKCRLCMMGFRRRGMLVNHLSKRHPDMKIEEVPELTLPIIKPNRDYFC
QYCDKVYKSASKRKAHILKNHPGAELPPSIRKLRPAGPGEPDPMLSTHTQLTGTIATPPVCCPHCSKQYS
SKTKMVQHIRKKHPEFAQLSNTIHTPLTTAVISATPAVLTTDSATGETVVTTDLLTQAMTELSQTLTTDY
RTPQGDYQRIQYIPVSQSASGLQQPQHIQLQVVQVASATSPHQSQQSTVDVGQLHDPQPYPQHAIQVQHI
QVSEPTASAPSSAQVSGQPLSPSAQQAQQGLSPSHIQGSSSTQGQALQQQQQQQQNSSVQHTYLPSAWNS
FRGYSSEIQMMTLPPGQFVITDSGVATPVTTGQVKAVTSGHYVLSESQSELEEKQTSALSGGVQVEPPAH
SDSLDPQTNSQQQTTQYIITTTTNGNGSSEVHITKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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