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Report for CCDS38147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38147.1 Public Mus musculus 2 Hoxd12 23 108 98 CCDS HistoryNCBI Gene:15432Re-query CCDS DB by CCDS ID:38147.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38147.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001878.5 ENSMUSP00000001878.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001878.5Link to Ensembl Protein Viewer:ENSMUSP00000001878.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001878Re-query CCDS DB by Protein ID:ENSMUSP00000001878
Original member Current member NCBI NM_008274.3 NP_032300.2 Accepted alive Link to Nucleotide Sequence:NM_008274.3Link to Protein Sequence:NP_032300.2Re-query CCDS DB by Nucleotide ID:NM_008274Re-query CCDS DB by Protein ID:NP_032300Link to BLAST:NP_032300.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032300.2 268 P23812 268 100% 0 0

Chromosomal Locations for CCDS 38147.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74675087 74675654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74675814 74676052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGTGTGAGCGCAGTCTCTACAGAGCTGGCTATGTGGGCTCGCTTCTGAATTTACAGTCACCGGACTCTT
TCTACTTTTCCAACCTGAGAGCCAATGGCAGCCAGTTGGCCGCGCTTCCCCCCATCTCATACCCTCGCAG
CGCGCTGCCCTGGGCTACTACGCCCGCCTCATGCACCCCTGCGCAGCCTGCCACCGCCTCTGCCTTTGGA
GGCTTCTCTCAGCCTTACTTGACCGGCTCTGGGCCAATTGGCCTGCAGTCTCCAGGCGCCAAGGACGGAC
CCGAAGACCAGGTCAAGTTCTATACGCCTGATGCGCCCACCGCATCTGAGGAACGCAGCCGGACTAGGCC
GCCCTTCGCCCCCGAGTCTAGTCTGGTTCATTCGGCTCTCAAAGGCACCAAGTATGACTACGCGGGTGTG
GGCCGGACCGCTCCAGGCTCTGCGACCCTGCTCCAGGGGGCCCCCTGTGCCTCCAGCTTCAAGGAAGACA
CCAAAGGCCCGCTCAACTTGAACATGGCAGTGCAAGTGGCCGGGGTGGCCTCTTGCCTGCGATCTTCACT
GCCCGACGGCCTGCCGTGGGGGGCGGCCCCGGGGAGGGCCCGCAAGAAGAGGAAACCCTACACAAAGCAG
CAGATTGCGGAGCTGGAGAACGAATTCCTGGTCAATGAATTCATCAACCGGCAGAAGCGTAAGGAATTGT
CTAACAGGCTGAACCTCAGCGACCAGCAGGTCAAAATCTGGTTCCAGAACCGGCGTATGAAGAAGAAGCG
GGTAGTGCAGCGCGAGCAAGCACTGGCCCTCTATTAG

Translation (268 aa):
MCERSLYRAGYVGSLLNLQSPDSFYFSNLRANGSQLAALPPISYPRSALPWATTPASCTPAQPATASAFG
GFSQPYLTGSGPIGLQSPGAKDGPEDQVKFYTPDAPTASEERSRTRPPFAPESSLVHSALKGTKYDYAGV
GRTAPGSATLLQGAPCASSFKEDTKGPLNLNMAVQVAGVASCLRSSLPDGLPWGAAPGRARKKRKPYTKQ
QIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVQREQALALY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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