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Report for CCDS24684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24684.1 Public Mus musculus 11 Rad50 23 108 98 CCDS HistoryNCBI Gene:19360Re-query CCDS DB by CCDS ID:24684.1Re-query CCDS DB by GeneID:19360See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020649.13 ENSMUSP00000020649.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020649.13Link to Ensembl Protein Viewer:ENSMUSP00000020649.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020649Re-query CCDS DB by Protein ID:ENSMUSP00000020649
Original member Current member NCBI NM_009012.2 NP_033038.2 Accepted alive Link to Nucleotide Sequence:NM_009012.2Link to Protein Sequence:NP_033038.2Re-query CCDS DB by Nucleotide ID:NM_009012Re-query CCDS DB by Protein ID:NP_033038Link to BLAST:NP_033038.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033038.2 1312 P70388-1 1312 99.9238% 0 1

Chromosomal Locations for CCDS 24684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 53650469 53650655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53652234 53652367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53654877 53655019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53655533 53655618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53668022 53668246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53669630 53669757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53674698 53674811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53674903 53674995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53675902 53676012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53678865 53679058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53679390 53679516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53680033 53680222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53683202 53683439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53684126 53684301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53686150 53686307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53688095 53688277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53692113 53692319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53692708 53692901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53694901 53695066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53695283 53695411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53698114 53698318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53698822 53699007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53701957 53702108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53705985 53706068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53706927 53707055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3939 nt):
ATGTCCCGGATCGAAAAGATGAGCATTCTGGGCGTGCGAAGTTTTGGGATAGAGGATAAAGATAAGCAGA
TTATCTCTTTCTTCAGCCCCCTCACAATTTTGGTTGGACCCAATGGGGCGGGGAAGACGACCATCATTGA
ATGTCTAAAGTATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTTCATGATCCC
AAGGTTGCTCAAGAAACAGACGTGCGGGCCCAGATTCGCCTGCAGTTTCGAGATGTGAATGGAGAGATGG
TAGCTGTGCACAGGTCTATGCTTTGCAGTCAGAAAAATAAAAAAACAGAATTTAAAACCTTGGAAGGAGT
CATTACTAGAATGAAGCATGGTGAAAAAGTCAGTCTCAGCTCCAAATGTGCAGAAATCGACAGAGAAATG
ATAAGTTGTCTTGGGGTTTCCAAGTCTGTGCTAAACAATGTTATTTTCTGTCACCAAGAAGACTCCAACT
GGCCTTTAAGTGAAGGAAAGGCTTTGAAGCAAAAATTTGATGAGATTTTTTCGGCAACAAGGTACATTAA
AGCCTTAGATACACTTCGACAGGTGCGTCAGACACAGGGTCAGAAAGTAAAAGAGTGTCAAACGGAATTG
AAATATCTGAAGCAAAATAAGGAGAAAGCGTGTGAGATCCGAGATCAGATTACGAGTAAGGAAGCCCAGT
TAGCGTCTTCGCAGGAAATTGTCAGGTCCTACGAGGATGAGCTTGAGCCATTGAAGAATCGCCTGAAAGA
GATTGAACACAACCTGTCTAAAATAATGAAACTTGATAATGAAATTAAAGCCTTGGAGAGCCGAAAGAAA
CAAATGGAGAAAGATAACAGTGAATTAGAACAGAAAATGGAAAAGGTTTTTCAAGGGACTGATGAGCAGC
TAAATGACTTGTATCACAATCACCAGAGAACAGTAAGGGAGAAAGAAAGGCGCCTGGTAGACTGCCAGCG
AGAACTGGAGAAGCTGAATAAAGAAGCACGGCTCCTCAACCAGGAAAAAGCAGAGCTGCTTGTGGAGCAG
GGTCGTCTACAGCTACAGGCAGATCGCCATCAAGAGCACATCCGAGCCAGAGACTCATTAATTCAGTCTT
TGGCAACACATCTTGAATTGGATGGTTTTGAGCGTGGACCATTCAGTGAAAGACAGATTAAAAATTTTCA
TGAACTTGTGAAAGAGAGACAGGAAAGAGAAGCTAAAACTGCCAGCCAGCTCTTGAGCGACCTGACAGAC
AAAGAAGCTCTGAAGCAGAGGCAGCTTGATGAGCTGAGGGACAGGAAGAGCGGACTGGGGAGGACGATTG
AGCTGAAGACAGAGATCCTCACGAAGAAGCAGAGCGAGCTGCGGCACGTGAGGAGTGAGCTGCAGCAGCT
GGAGGGCTCCTCCGACAGGATTCTGGAACTGGACCAGGAGCTCACGAAAGCTGAACGTGAATTAAGCAAG
GCCGAGAAAAATAGCAGCATAGAAACCCTAAAAGCAGAGGTAATGAGCCTCCAAAATGAGAAAGCTGACC
TGGACAGGAGCTTGCGAAAGCTGGACCAGGAGATGGAGCAGTTAAACCATCATACAACAACCCGCACACA
GATGGAGATGCTCACCAAAGACAAAACTGACAAAGATGAACAGATCAGAAAAATAAAGTCTAGGCACAGT
GATGAACTAACTTCACTGTTGGGGTACTTTCCTAACAAAAAACAGCTTGAAGACTGGCTTCATTCTAAAT
CCAAAGAAATTAATCAGACCAGGGACAGACTTGCCAAACTGAACAAAGAGCTAGCTTCAGCTGAACAAAA
TAAAAATCATATAAATAATGAGCTAAAGAAAAAGGAAGAACAGTTGTCCAGTTATGAAGATAAGCTATTT
GATGTTTGTGGTAGCCAAGATTTGGAAAGTGATTTGGGCAGACTTAAAGAAGAAATTGAAAAGTCCTCAA
AGCAGCGAGCCATGCTGGCAGGAGCCACAGCAGTTTACTCCCAGTTCATTACGCAGCTGACAGATGAAAA
CCAGTCCTGCTGCCCAGTCTGTCAGAGAGTATTTCAGACAGAGGCTGAGTTACAGGAAGTCATCAGCGAC
TTGCAGTCCAAGCTGAGGCTTGCTCCAGATAAACTCAAGTCAACAGAATCGGAACTGAAGAAAAAAGAGC
GGCGCCGTGATGAAATGCTTGGGCTTGTGCCCGTGAGGCAAAGCATAATTGATTTGAAGGAAAAGGAAAT
ACCAGAATTAAGAAACCGACTACAGAGTGTCAATAGAGACATACAGCGCCTAAAGAATGACATAGAAGAG
CAGGAAACACTCTTGGGTACAATAATGCCTGAAGAAGAAAGTGCTAAAGTGTGCCTGACAGATGTTACAA
TCATGGAGAGGTTCCAGATGGAGCTGAAAGATGTTGAAAGGAAAATTGCACAGCAGGCAGCTAAGCTGCA
GGGAGTAGACTTGGACCGGACTGTCCAGCAGGTTAACCAGGAAAAGCAGGAAAAGCAGCACAGGCTGGAT
ACAGTTACCAGTAAGATTGAATTGAACCGTAAGCTTATACAGGACCAGCAGGAACAAATCCAACACCTGA
AAAGTAAAACAAATGAGCTGAAGTCAGAGAAGCTGCAGATAGCCACCAATTTGCAACGGCGCCAGCAAAT
GGAGGAGCAGAGTGTGGAATTATCCACTGAAGTCCAGTCTTTAAACAGAGAAATAAAGGATGCTAAAGAA
CAAATAAGCCCTTTGGAGACAGCATTGGAAAAGTTGCAGCAGGAAAAAGAAGAATTAATCCACAGAAAAC
ATACAAGTAACAAAATGGCTCAGGATAAAATTAATGATATCAAAGAGAAAGTTAAAAATATTCATGGTTA
CATGAAAGACATAGAGAATTATATTCAAGATGGAAAAGATGACTACAAGAAGCAAAAAGAAACTGAACTT
AATGGAGTTGCTGTTCAACTAAATGAATGTGAGAAACACAGAGAAAAGATAAATAAAGACATGGGAACCA
TGAGGCAAGACATCGACACACAGAAGATACAGGAAAGGTGGCTACAGGATAACCTTACACTAAGAAAAAG
GAGAGATGAACTAAAAGAAGTGGAAGAAGAACGAAAACAACACTTGAAGGAGATGGGACAAATGCAAGTT
TTACAAATGAAAAATGAGCATCAGAAGTTGGAAGAGAACATAGACACTATAAAGAGAAATCACAGTTTGG
CATTGGGGCGTCAGAAAGGCTATGAAGACGAAATTCTTCACTTTAAAAAGGAGCTCCGAGAACCTCAGTT
CCGGGATGCCGAGGAAAAGTACAGAGAAATGATGATCGTCATGAGGACCACAGAGCTGGTGAACAAGGAC
CTCGACATCTACTACAAGACTCTTGACCAAGCAATTATGAAATTTCACAGTATGAAAATGGAAGAAATCA
ACAAAATTATTCGTGATCTTTGGCGGAGTACCTATCGTGGGCAAGATATTGAATACATAGAAATTCGATC
TGATGCTGATGAAAATGTATCGGCTTCTGATAAAAGGCGAAATTACAACTACCGAGTGGTGATGCTGAAG
GGGGACACAGCCTTGGACATGCGTGGACGATGCAGTGCTGGACAGAAGGTGCTAGCGTCTCTCATCATCC
GACTGGCCCTGGCGGAAACCTTCTGTCTGAACTGTGGCATCCTTGCCTTGGATGAGCCGACAACAAATCT
CGACCGAGAAAACATTGAGTCTCTTGCACATGCTTTGGTTGAGATCATAAAAAGTCGCTCACAGCAGCGC
AACTTCCAACTTCTGGTAATCACTCACGATGAAGATTTTGTGGAGCTCTTAGGGCGATCTGAGTATGTGG
AGAAATTCTACAGGGTGAAGAAGAACATGGACCAGTGCTCAGAGATTGTCAAGTGCAGCATCAGCTCCCT
GGGTTCTTATGTTCACTAA

Translation (1312 aa):
MSRIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDP
KVAQETDVRAQIRLQFRDVNGEMVAVHRSMLCSQKNKKTEFKTLEGVITRMKHGEKVSLSSKCAEIDREM
ISCLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRYIKALDTLRQVRQTQGQKVKECQTEL
KYLKQNKEKACEIRDQITSKEAQLASSQEIVRSYEDELEPLKNRLKEIEHNLSKIMKLDNEIKALESRKK
QMEKDNSELEQKMEKVFQGTDEQLNDLYHNHQRTVREKERRLVDCQRELEKLNKEARLLNQEKAELLVEQ
GRLQLQADRHQEHIRARDSLIQSLATHLELDGFERGPFSERQIKNFHELVKERQEREAKTASQLLSDLTD
KEALKQRQLDELRDRKSGLGRTIELKTEILTKKQSELRHVRSELQQLEGSSDRILELDQELTKAERELSK
AEKNSSIETLKAEVMSLQNEKADLDRSLRKLDQEMEQLNHHTTTRTQMEMLTKDKTDKDEQIRKIKSRHS
DELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASAEQNKNHINNELKKKEEQLSSYEDKLF
DVCGSQDLESDLGRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISD
LQSKLRLAPDKLKSTESELKKKERRRDEMLGLVPVRQSIIDLKEKEIPELRNRLQSVNRDIQRLKNDIEE
QETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGVDLDRTVQQVNQEKQEKQHRLD
TVTSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIATNLQRRQQMEEQSVELSTEVQSLNREIKDAKE
QISPLETALEKLQQEKEELIHRKHTSNKMAQDKINDIKEKVKNIHGYMKDIENYIQDGKDDYKKQKETEL
NGVAVQLNECEKHREKINKDMGTMRQDIDTQKIQERWLQDNLTLRKRRDELKEVEEERKQHLKEMGQMQV
LQMKNEHQKLEENIDTIKRNHSLALGRQKGYEDEILHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD
LDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLK
GDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRVKKNMDQCSEIVKCSISSLGSYVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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