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Report for CCDS28052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28052.1 Public Mus musculus 16 Ece2 23 108 98 CCDS HistoryNCBI Gene:107522Re-query CCDS DB by CCDS ID:28052.1Re-query CCDS DB by GeneID:107522See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003898.11 ENSMUSP00000003898.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003898.11Link to Ensembl Protein Viewer:ENSMUSP00000003898.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000003898Re-query CCDS DB by Protein ID:ENSMUSP00000003898
Original member Current member NCBI NM_139293.2 NP_647454.2 Accepted alive Link to Nucleotide Sequence:NM_139293.2Link to Protein Sequence:NP_647454.2Re-query CCDS DB by Nucleotide ID:NM_139293Re-query CCDS DB by Protein ID:NP_647454Link to BLAST:NP_647454.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647454.2 763 B2RQR8-1 763 100% 0 0

Chromosomal Locations for CCDS 28052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20630009 20630047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20630352 20630438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20630781 20630910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20631097 20631312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20632532 20632656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20632748 20632894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20633050 20633115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20637661 20637849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20638660 20638802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20639172 20639286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20640615 20640725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20642275 20642373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20642473 20642550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20643346 20643449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20643623 20643733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20643853 20643920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20644068 20644258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20644341 20644436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20645060 20645236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2292 nt):
ATGAACGTCGCGCTGCACGAGTTGGGTGGCGGAGGCAGTATGGTGGAGTACAAACGTGCTAAGCTTCGGG
ATGAAGAATCACCAGAGATTACAGTTGAAGGCAGGGCCACCCGGGACTCACTGGAGGTGGGATTCCAGAA
GAGGACAAGACAACTGTTTGGTTCACACACACAGTTGGAGCTGGTCTTGGCAGGCCTCATTCTAGTGTTG
GCTGCCCTTCTTTTGGGCTGCCTCGTGGCTCTGTGGGTCCACAGAGACCCAGCCCATAGCACCTGCGTCA
CAGAAGCCTGCATTCGAGTAGCTGGAAAAATCCTGGAGTCTCTAGACCGTGGGGTGAGCCCCTGTCAGGA
CTTTTACCAGTTCTCCTGTGGAGGCTGGATTCGAAGAAACCCTCTACCCAATGGACGTTCTCGCTGGAAC
ACCTTCAACAGCCTCTGGGACCAGAACCAGGCCATACTGAAGCACCTACTTGAGAACACCACTTTCAATT
CCAGCAGTGAAGCTGAGAGGAAGACTCGGAGTTTCTACCTGTCCTGCCTACAGTCGGAGCGCATTGAGAA
GCTAGGAGCCAAGCCACTTAGAGACCTCATTGACAAGATCGGTGGTTGGAACATAACGGGGCCTTGGGAC
GAGGACAGCTTCATGGATGTGCTCAAGGCAGTCGCAGGGACCTACAGAGCCACCCCCTTCTTCACCGTCT
ACGTCAGTGCTGATTCTAAGAGTTCTAACAGCAATATCATCCAGGTGGACCAGTCTGGGCTTTTTCTGCC
CTCTCGAGATTACTACCTAAATAGAACTGCCAATGAGAAAGTTCTCACTGCCTACCTGGACTACATGGTG
GAGCTGGGAGTGCTGCTGGGTGGACAGCCGACCTCCACTCGGGAGCAGATGCAGCAGGTGCTGGAGCTGG
AGATACAGCTGGCTAACATCACTGTGCCCCAGGACCAGCGGCGTGATGAGGAGAAGATCTATCACAAGAT
GAGCATCTCAGAGCTGCAGGCTCTCGCGCCCGCCGTGGACTGGCTGGAGTTCCTTTCTTTCTTGTTATCG
CCACTTGAGTTGGGTGATTCTGAGCCTGTGGTGGTGTATGGGACTGAGTATTTACAGCAGGTGTCGGAGC
TCATCAACCGTACTGAACCAAGCATCCTGAACAATTACCTAATTTGGAACCTGGTACAGAAGACGACCTC
AAGCCTTGACCAGCGCTTTGAGACTGCACAGGAGAAACTGCTGGAGACCCTCTACGGTACCAAGAAGTCC
TGCACTCCGAGGTGGCAGACCTGCATCTCCAATACAGATGATGCCCTTGGCTTTGCTCTGGGTTCACTCT
TTGTGAAAGCCACATTTGACCGACAAAGCAAGGAAATCGCCGAGGGGATGATCAATGAAATCCGCTCTGC
TTTTGAGGAGACCCTGGGAGACTTGGTTTGGATGGATGAGAAGACCCGGCTGGCAGCCAAGGAGAAAGCA
GATGCCATCTATGATATGATTGGTTTCCCTGATTTCATCCTGGAGCCCAAAGAGCTGGATGATGTTTATG
ATGGGTATGAAGTCTCTGAAGATTCTTTTTTCCAAAACATGTTGAATCTGTACAACTTCTCAGCTAAGGT
GATGGCTGACCAGCTCCGCAAACCTCCCAGCCGAGACCAGTGGAGCATGACACCTCAGACCGTGAACGCT
TACTACCTTCCAACCAAGAATGAAATCGTCTTCCCTGCTGGCATCTTGCAGGCCCCCTTCTATGCTCACA
ACCATCCAAAGGCCTTGAACTTTGGTGGCATCGGCGTAGTGATGGGCCATGAGTTGACACATGCCTTTGA
TGACCAAGGGCGTGAGTATGACAAAGAAGGGAATCTGCGTCCTTGGTGGCAGAATGAGTCACTGACGGCT
TTCCAGAACCATACAGCCTGCATGGAAGAACAGTACAGCCAGTACCAGGTCAATGGAGAGAGGCTCAATG
GACTCCAGACCCTGGGGGAAAACATCGCCGATAATGGGGGCCTTAAGGCTGCTTACAATGCTTACAAAGC
ATGGCTGAGAAAGCATGGGGAGGAGCAGCCGCTGCCTGCTGTGGGGCTCACCAATCACCAGCTTTTCTTC
GTGGGATTTGCTCAGGTGTGGTGCTCGGTCCGCACACCAGAGAGCTCTCACGAGGGGCTGGTGACCGACC
CCCACAGCCCTGCCCGTTTCCGAGTGCTGGGCACTCTCTCCAACTCCCGAGACTTCCTTCGGCACTTCGG
CTGCCCTGTCGGCTCCCCCATGAACCCAGGGCAGCTATGTGAGGTGTGGTAG

Translation (763 aa):
MNVALHELGGGGSMVEYKRAKLRDEESPEITVEGRATRDSLEVGFQKRTRQLFGSHTQLELVLAGLILVL
AALLLGCLVALWVHRDPAHSTCVTEACIRVAGKILESLDRGVSPCQDFYQFSCGGWIRRNPLPNGRSRWN
TFNSLWDQNQAILKHLLENTTFNSSSEAERKTRSFYLSCLQSERIEKLGAKPLRDLIDKIGGWNITGPWD
EDSFMDVLKAVAGTYRATPFFTVYVSADSKSSNSNIIQVDQSGLFLPSRDYYLNRTANEKVLTAYLDYMV
ELGVLLGGQPTSTREQMQQVLELEIQLANITVPQDQRRDEEKIYHKMSISELQALAPAVDWLEFLSFLLS
PLELGDSEPVVVYGTEYLQQVSELINRTEPSILNNYLIWNLVQKTTSSLDQRFETAQEKLLETLYGTKKS
CTPRWQTCISNTDDALGFALGSLFVKATFDRQSKEIAEGMINEIRSAFEETLGDLVWMDEKTRLAAKEKA
DAIYDMIGFPDFILEPKELDDVYDGYEVSEDSFFQNMLNLYNFSAKVMADQLRKPPSRDQWSMTPQTVNA
YYLPTKNEIVFPAGILQAPFYAHNHPKALNFGGIGVVMGHELTHAFDDQGREYDKEGNLRPWWQNESLTA
FQNHTACMEEQYSQYQVNGERLNGLQTLGENIADNGGLKAAYNAYKAWLRKHGEEQPLPAVGLTNHQLFF
VGFAQVWCSVRTPESSHEGLVTDPHSPARFRVLGTLSNSRDFLRHFGCPVGSPMNPGQLCEVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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