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Report for CCDS34264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34264.1 Public Homo sapiens 5 PLAC8L1 24 110 108 CCDS HistoryNCBI Gene:153770Re-query CCDS DB by CCDS ID:34264.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34264.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311450.9 ENSP00000309087.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311450.9Link to Ensembl Protein Viewer:ENSP00000309087.4Re-query CCDS DB by Nucleotide ID:ENST00000311450Re-query CCDS DB by Protein ID:ENSP00000309087
Original member Current member NCBI NM_001029869.3 NP_001025040.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001029869.3Link to Protein Sequence:NP_001025040.1Re-query CCDS DB by Nucleotide ID:NM_001029869Re-query CCDS DB by Protein ID:NP_001025040Link to BLAST:NP_001025040.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025040.1 177 A1L4L8 177 100% 0 0

Chromosomal Locations for CCDS 34264.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146084432 146084572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146085461 146085597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146098156 146098292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146104193 146104311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGAATTGGTTTGGAAGTAACTTCTTCAGGTGTCCTGAGGATCTTTCCTTACTCAACATATACTCACCTC
TGTTGTCACACATGTCATCTGAAGATGAACATTTTATTTCCAACTTGAGAGGCCATGTACCAGCCAGCGC
TGTGGTGAAGCAGCCTGTTCGGGGAGCCAGTGGCAGGACGACAATCACAGCAATTGTCCAGACTGGCGGG
GGCTGGAGCACCGGTCTCTTCAGTGTCTGCAGAGATAGGAGAATTTGTTTCTGTGGTCTATTCTGTCCTA
TGTGTCTTGAGTGTGACATCGCCAGGCATTATGGAGAGTGTCTTTGTTGGCCGTTGTTACCTGGGTCCAC
CTTTGCACTGAGAATTGGCACCAGGGAGAGACATAAAATACAGGGCACACTGTGTGAAGACTGGCTGGCG
GTGCACTGCTGTTGGGCTTTTTCCATCTGCCAGGTGGCCCGGGAACTCAAGATGAGGACCTCCCAAGTCT
ATGAAATCTGTGCAGTCCCAATGACTAAGGACACCCTGGTTTGA

Translation (177 aa):
MNWFGSNFFRCPEDLSLLNIYSPLLSHMSSEDEHFISNLRGHVPASAVVKQPVRGASGRTTITAIVQTGG
GWSTGLFSVCRDRRICFCGLFCPMCLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQGTLCEDWLA
VHCCWAFSICQVARELKMRTSQVYEICAVPMTKDTLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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