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Report for CCDS34124.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34124.2 Public Homo sapiens 5 PLEKHG4B 24 110 108 CCDS HistoryNCBI Gene:153478Re-query CCDS DB by CCDS ID:34124.2See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 34124.1
The coding region has been updated to represent an exon combination that is more supported by available data. The earlier representation (NM_052909.3) was partial at the 5' end.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 34124.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000637938.2 ENSP00000490806.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000637938.2Link to Ensembl Protein Viewer:ENSP00000490806.1Re-query CCDS DB by Nucleotide ID:ENST00000637938Re-query CCDS DB by Protein ID:ENSP00000490806
Original member Current member NCBI NM_052909.5 NP_443141.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052909.5Link to Protein Sequence:NP_443141.4Re-query CCDS DB by Nucleotide ID:NM_052909Re-query CCDS DB by Protein ID:NP_443141Link to BLAST:NP_443141.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443141.4 1627 Q96PX9 1627 100% 0 0

Chromosomal Locations for CCDS 34124.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92232 92276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113251 113448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139483 140716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143047 143256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143380 143503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144827 144920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151513 151599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154875 154991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 155345 155443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 156071 156210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 156773 156911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161783 161944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 162722 163548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 169340 169592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 171043 171132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 171214 171444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 172897 173067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173918 174098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181514 181675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 182004 182323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4884 nt):
ATGGGTTTCAGCACAGCAGACGGCGGGGGCGGCCCAGGCGCCCGGGATCTGGAATCTCTTGATGCCTGTA
TCCAGAGGACGCTCTCTGCCTTGTACCCACCGTTTGAAGCCACGGCAGCCACGGTGCTCTGGCAGCTGTT
CAGCGTGGCCGAGAGGTGCCACGGTGGGGACGGGCTGCACTGCCTCACCAGCTTCCTCCTCCCAGCCAAG
AGGGCCCTGCAGCACCTGCAGCAGGAAGCCTGTGCCAGGTACAGGGGTCTGGTCTTCCTGCACCCAGGCT
GGCCGCTGTGCGCCCATGAGAAGGTGGTGGTGCAGCTGGCGTCCCTGCACGGAGTCAGGCTCCAGCCCGG
GGACTTCTACCTGCAGGTCACGTCGGCGGGGAAGCAGTCAGCTAGACTGGTCTTGAAATGCCTGTCCCGG
CTGGGAAGAGGCACAGAGGAAGTCACCGTCCCTGAGGCCATGTATGGCTGTGTCTTCACGGGGGCGTTCC
TGGAGTGGGTGAACCGGGAGCGGCGCCATGTCCCCCTGCAAACCTGCTTGCTGACCTCAGGCTTGGCCGT
CCACCGAGCCCCGTGGAGCGACGTCACTGACCCTGTCTTTGTCCCCAGCCCTGGAGCCATCCTGCAGAGC
TACTCCAGCTGCACAGGTCCTGAGCGGCTGCCCAGCAGCCCCTCAGAGGCCCCAGTCCCCACCCAAGCCA
CAGCAGGCCCCCATTTCCAGGGAAGCGCCTCTTGCCCCGACACCCTGACCTCACCCTGCCGCCGAGGGCA
TACGGGCAGCGACCAGCTCAGGCACCTTCCTTATCCAGAAAGAGCCGAGCTGGGAAGCCCCAGGACCCTG
TCTGGAAGCTCAGACAGGGACTTCGAAAAGGTCAGCCCCTCAGAGCAGGGCCCACGGATGCCCCCTGAGA
ACTGTGGGGGGTCGGGGGAGAGGCCGGACCCCATGGACCAGGAGGACAGACCCAAGGCCCTCACCTTCCA
CACAGACCTGGGCATCCCGAGCAGCAGGAGGCGGCCGCCGGGGGACCCCACTTGTGTGCAGCCTAGACGC
TGGTTCAGGGAGTCGTACATGGAAGCCTTGCGGAACCCCATGCCCCTGGGCAGCTCTGAGGAGGCCCTCG
GGGACCTGGCCTGCAGCTCCCTGACTGGAGCCAGCAGGGACCTGGGGACTGGGGCAGTAGCCAGTGGGAC
CCAGGAGGAAACCTCTGGCCCCCGGGGAGACCCCCAACAGACCCCAAGTCTAGAGAAGGAGAGGCACACA
CCCAGCCGGACAGGTCCAGGAGCTGCAGGGCGGACTCTTCCCAGGAGATCTCGGTCCTGGGAAAGGGCAC
CCAGAAGCTCCAGAGGGGCCCAGGCTGCAGCCTGCCACACCTCCCACCACTCAGCAGGCTCCAGGCCTGG
GGGCCACCTAGGAGGACAAGCTGTGGGGACCCCAAACTGTGTCCCAGTAGAGGGTCCCGGCTGCACCAAA
GAGGAAGACGTTCTTGCATCCTCAGCCTGTGTCAGCACAGACGGCGGCAGCCTCCATTGCCACAACCCCA
GCGGGCCTTCCGATGTGCCTGCCCGGCAGCCACACCCCGAGCAAGAAGGGTGGCCACCCGGCACAGGAGA
CTTCCCCAGCCAGGTGCCCAAGCAGGTGCTGGACGTCAGTCAGGAGCTGCTGCAGTCCGGGGTCGTCACC
CTCCCAGGGACCCGAGACCGTCATGGCAGAGCAGTGGTGCAGGTCCGCACCAGGAGCCTGCTCTGGACCA
GGGAACACTCGTCCTGTGCTGAGCTGACCCGCCTGCTGCTGTACTTCCATAGCATCCCCAGGAAAGAGGT
CCGGGACCTGGGGCTGGTTGTCCTGGTGGATGCACGCAGGAGTCCAGCTGCCCCTGCCGTCTCCCAGGCC
CTCTCAGGATTGCAGAACAACACATCTCCTATAATTCATAGTATCTTGCTGTTGGTAGATAAAGAATCTG
CATTTAGGCCTGACAAGGATGCAATAATTCAGTGTGAGGTCGTGAGCTCCCTGAAGGCCGTGCACAAATT
TGTTGACAGCTGCCAGCTGACCGCAGACCTCGACGGCTCCTTTCCCTACAGCCATGGTGACTGGATCTGC
TTCCGTCAGAGGCTGGAACACTTCGCTGCAAACTGTGAAGAAGCCATCATTTTCCTACAGAATTCATTCT
GCTCCCTGAACACCCACAGAACCCCAAGAACAGCCCAGGAAGTCGCCGAGTTAATTGACCAGCATGAGAC
GATGATGAAGCTTGTCCTGGAAGACCCACTGCTTGTGTCTCTCAGGCTGGAGGGGGGCACCGTCCTGGCG
CGGCTGAGGAGAGAAGAGCTTGGCACAGAAGACAGCCGGGACACCCTGGAGGCCGCCACAAGCCTGTACG
ACCGAGTGGATGAGGAGGTGCACAGGCTGGTCCTCACCTCGAACAATCGTCTCCAGCAGCTGGAGCACCT
CCGGGAGCTGGCGTCACTCCTGGAAGGGAATGACCAGCAATCCTGCCAGAAAGGACTACAGCTGGCGAAG
GAGAACCCGCAACGTACAGAGGAAATGGTCCAGGATTTCAGAAGGGGCCTGAGCGCCGTGGTCAGCCAGG
CTGAGTGCAGGGAGGGAGAGCTGGCCAGGTGGACCCGCTCGTCCGAGTTGTGCGAGACGGTGAGCAGCTG
GATGGGGCCCCTGGACCCGGAGGCTTGTCCCTCCTCACCCGTGGCTGAGTGTTTGAGGAGCTGTCACCAG
GAGGCTACCTCGGTGGCTGCAGAGGCCTTCCCCGGGGCAGGTGTGGCAGTGCTGAAGCCTCATGCCCTGG
GGAAACCGTGGGCATCACAGCAAGACCTGTGGCTGCAGTACCCCCAGACCCGGCTCCGTCTGGAAGAGGC
CCTTTCTGAGGCTGCCCCAGACCCCAGCTTACCGCCCCTTGCCCAGAGCCCCCCAAAGCATGAGCGTGCC
CAGGAGGCCATGAGGAGGCACCAGAAGCCACCCTCATTCCCCAGCACGGACAGTGGGGGTGGTGCCTGGG
AACCTGCGCAACCACTGTCCGGCCTCCCTGGACGAGCGCTTCTGTGTGGACAGGACGGGGAGACCCTGCG
CCCAGGGCTGTGTGCTCTGTGGGACCCACTGTCCCTCCTCAGGGGCCTTCCAGGGGCAGGGGCCACCACG
GCCCACCTGGAGGACAGCTCTGCCTGTTCCTCTGAGCCCACCCAGACCCTGGCCAGCCGCCCCAGGAAAC
ATCCCCAGAAGAAAATGATAAAGAAAACGCAAAGTTTCGAGATACCTCAGCCCGACAGTGGCCCCAGGGA
CTCCTGCCAGCCAGACCATACTAGTGTCTTCAGCAAGGGCCTGGAGGTAACCAGCACTGTAGCCACAGAG
AAGAAGCTCCCGCTGTGGCAGCATGCCAGGAGCCCCCCGGTCACTCAGAGCCGGAGTCTGTCCTCCCCCT
CGGGGCTCCACCCTGCTGAGGAGGATGGGAGGCAGCAGGTGGGCAGCAGCCGACTGAGGCACATCATGGC
CGAGATGATCGCCACAGAGAGGGAGTACATTCGGTGCTTAGGATACGTCATTGACAACTATTTTCCAGAA
ATGGAAAGAATGGACTTGCCCCAGGGCCTTCGAGGGAAGCACCACGTTATTTTCGGCAACTTGGAGAAGC
TCCACGACTTCCACCAGCAGCACTTCCTCCGGGAGCTGGAGCGCTGCCAGCACTGCCCCTTGGCCGTGGG
CCGCAGTTTCCTGAGACACGAAGAGCAGTTTGGGATGTACGTGATCTACAGCAAAAACAAGCCGCAGTCG
GATGCCCTGCTCAGCAGCCATGGCAACGCCTTCTTCAAGGACAAGCAGCGGGAGCTAGGTGACAAAATGG
ACCTGGCCTCCTACCTGCTGCGGCCCGTGCAGCGTGTGGCCAAGTACGCGCTGCTACTCCAGGACCTGCT
CAAGGAGGCCAGCTGTGGCCTGGCCCAGGGGCAGGAGCTGGGCGAGCTCCGAGCCGCCGAGGTCGTGGTC
TGCTTCCAGCTGCGTCACGGCAATGACCTGCTGGCCATGGACGCCATCCGCGGCTGTGACGTGAATTTGA
AGGAACAGGGGCAGCTGAGATGCCGGGATGAGTTTATCGTTTGCTGCGGGAGGAAGAAGTATCTGAGGCA
TGTGTTCCTCTTTGAAGACCTCATCCTGTTTAGCAAGACCCAGAAGGTGGAGGGCAGCCACGACGTCTAC
CTGTACAAGCAGTCCTTCAAGACGGCCGAGATCGGGATGACAGAGAACGTCGGGGACAGTGGCTTGAGGT
TTGAGATTTGGTTTCGCAGGCGGCGGAAATCTCAGGACACCTACATTCTCCAAGCAAGCTCGGCAGAGGT
CAAGAGTGCATGGACCGATGTCATAGGGAGGATCCTGTGGCGGCAGGCACTAAAGAGCAGAGAACTCAGA
ATCCAAGAAATGGCATCCATGGGTATAGGCAACCAGCCATTCATGGATGTCAAGCCCAGAGACCGGACCC
CTGACTGTGCAGTGATAAGCGACCGGGCTCCCAAATGTGCAGTGATGAGCGACCGAGTCCCCGACAGCAT
CGTCAAGGGCACAGAGTCACAAATGAGAGGGTCCACAGCGGTGTCCTCCTCTGACCACGCCGCCCCCTTC
AAGCGACCACACTCCACCATCTCAGACAGCAGCACCTCCTCTTCTAGCAGCCAGTCCTCCTCCATCCTGG
GGTCGCTGGGCCTGCTTGTGTCCTCCAGCCCAGCCCACCCGGGCCTATGGAGCCCTGCCCACAGCCCCTG
GTCATCTGATATCAGAGCCTGCGTCGAGGAAGATGAGCCAGAGCCAGAACTAGAGACGGGCACCCAGGCT
GCAGTGTGTGAGGGGGCTCCTGCTGTGCTGCTGAGCCGCACACGCCAGGCCTGA

Translation (1627 aa):
MGFSTADGGGGPGARDLESLDACIQRTLSALYPPFEATAATVLWQLFSVAERCHGGDGLHCLTSFLLPAK
RALQHLQQEACARYRGLVFLHPGWPLCAHEKVVVQLASLHGVRLQPGDFYLQVTSAGKQSARLVLKCLSR
LGRGTEEVTVPEAMYGCVFTGAFLEWVNRERRHVPLQTCLLTSGLAVHRAPWSDVTDPVFVPSPGAILQS
YSSCTGPERLPSSPSEAPVPTQATAGPHFQGSASCPDTLTSPCRRGHTGSDQLRHLPYPERAELGSPRTL
SGSSDRDFEKVSPSEQGPRMPPENCGGSGERPDPMDQEDRPKALTFHTDLGIPSSRRRPPGDPTCVQPRR
WFRESYMEALRNPMPLGSSEEALGDLACSSLTGASRDLGTGAVASGTQEETSGPRGDPQQTPSLEKERHT
PSRTGPGAAGRTLPRRSRSWERAPRSSRGAQAAACHTSHHSAGSRPGGHLGGQAVGTPNCVPVEGPGCTK
EEDVLASSACVSTDGGSLHCHNPSGPSDVPARQPHPEQEGWPPGTGDFPSQVPKQVLDVSQELLQSGVVT
LPGTRDRHGRAVVQVRTRSLLWTREHSSCAELTRLLLYFHSIPRKEVRDLGLVVLVDARRSPAAPAVSQA
LSGLQNNTSPIIHSILLLVDKESAFRPDKDAIIQCEVVSSLKAVHKFVDSCQLTADLDGSFPYSHGDWIC
FRQRLEHFAANCEEAIIFLQNSFCSLNTHRTPRTAQEVAELIDQHETMMKLVLEDPLLVSLRLEGGTVLA
RLRREELGTEDSRDTLEAATSLYDRVDEEVHRLVLTSNNRLQQLEHLRELASLLEGNDQQSCQKGLQLAK
ENPQRTEEMVQDFRRGLSAVVSQAECREGELARWTRSSELCETVSSWMGPLDPEACPSSPVAECLRSCHQ
EATSVAAEAFPGAGVAVLKPHALGKPWASQQDLWLQYPQTRLRLEEALSEAAPDPSLPPLAQSPPKHERA
QEAMRRHQKPPSFPSTDSGGGAWEPAQPLSGLPGRALLCGQDGETLRPGLCALWDPLSLLRGLPGAGATT
AHLEDSSACSSEPTQTLASRPRKHPQKKMIKKTQSFEIPQPDSGPRDSCQPDHTSVFSKGLEVTSTVATE
KKLPLWQHARSPPVTQSRSLSSPSGLHPAEEDGRQQVGSSRLRHIMAEMIATEREYIRCLGYVIDNYFPE
MERMDLPQGLRGKHHVIFGNLEKLHDFHQQHFLRELERCQHCPLAVGRSFLRHEEQFGMYVIYSKNKPQS
DALLSSHGNAFFKDKQRELGDKMDLASYLLRPVQRVAKYALLLQDLLKEASCGLAQGQELGELRAAEVVV
CFQLRHGNDLLAMDAIRGCDVNLKEQGQLRCRDEFIVCCGRKKYLRHVFLFEDLILFSKTQKVEGSHDVY
LYKQSFKTAEIGMTENVGDSGLRFEIWFRRRRKSQDTYILQASSAEVKSAWTDVIGRILWRQALKSRELR
IQEMASMGIGNQPFMDVKPRDRTPDCAVISDRAPKCAVMSDRVPDSIVKGTESQMRGSTAVSSSDHAAPF
KRPHSTISDSSTSSSSSQSSSILGSLGLLVSSSPAHPGLWSPAHSPWSSDIRACVEEDEPEPELETGTQA
AVCEGAPAVLLSRTRQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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