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Report for CCDS34645.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34645.2 Public Homo sapiens 7 ZNF138 24 110 108 CCDS HistoryNCBI Gene:7697Re-query CCDS DB by CCDS ID:34645.2Re-query CCDS DB by GeneID:7697See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 34645.1
The coding region has been updated to represent an alternative splicing pattern, which results in an extended N-terminus that is more supported by the available transcript and protein data. The update adds an N-terminal KRAB domain to the protein.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34645.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440155.6 ENSP00000407262.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440155.6Link to Ensembl Protein Viewer:ENSP00000407262.2Re-query CCDS DB by Nucleotide ID:ENST00000440155Re-query CCDS DB by Protein ID:ENSP00000407262
Original member Current member NCBI NM_006524.4 NP_006515.3 Accepted alive Link to Nucleotide Sequence:NM_006524.4Link to Protein Sequence:NP_006515.3Re-query CCDS DB by Nucleotide ID:NM_006524Re-query CCDS DB by Protein ID:NP_006515Link to BLAST:NP_006515.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006515.3 293 P52744-2 293 100% 0 0

Chromosomal Locations for CCDS 34645.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 64794569 64794571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64814918 64815044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64831451 64832202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGGACCACTGACATTTATGGATGTGGCCATAGAGTTCTCTTTGGAGGAGTGGCAGTGCCTGGACACTG
CACAGCGGAATGTATATAGGCATGTGATGTTAGAGAACTACAGAAACCTGGTTTTCTTGGCTCTGTGTTC
TCGTTTTGCCCAAGACCTTTGGCTAGAGCAGAACATAAAAGATTCTTTCCAAAAAGTGACACTGAGCAGA
TATGGAAAATATGGACATAAGAATTTACAGTTAAGAAAAGGCTGTAAAAGTGTGGATGAGTGTAAGGGAC
ACCAAGGAGGTTTTAATGGACTTAACCAATGTTTGAAAATTACCACAAGCAAAATATTTCAATGTAATAA
ATATGTAAAAGTCATGCATAAATTTTCAAATTCAAATAGACACAAGATAAGACATACTGAAAATAAACAT
TTCAGATGTAAAGAATGTGACAAATCACTTTGCATGCTTTCACGCCTAACTCAACATAAAAAAATTCATA
CTAGAGAGAATTTCTACAAATGTGAAGAGTGTGGAAAAACCTTTAACTGGTCCACAAACCTTTCTAAACC
TAAGAAAATTCATACTGGAGAAAAACCCTACAAATGTGAAGTATGTGGAAAAGCCTTTCACCAATCCTCA
ATCCTTACTAAACATAAGATAATTCGTACTGGAGAAAAACCCTATAAATGTGCACACTGTGGCAAAGCCT
TTAAACAGTCCTCACACCTTACTAGACATAAGATAATTCATACTGAAGAGAAACCCTACAAATGTGAACA
ATGTGGCAAGGTCTTTAAGCAGTCCCCAACCCTTACTAAACATCAGATAATTTATACTGGAGAGGAACCA
TACAAATGTGAGGAATGTGGCAAAGCTTTTAACCTATCTTAA

Translation (293 aa):
MGPLTFMDVAIEFSLEEWQCLDTAQRNVYRHVMLENYRNLVFLALCSRFAQDLWLEQNIKDSFQKVTLSR
YGKYGHKNLQLRKGCKSVDECKGHQGGFNGLNQCLKITTSKIFQCNKYVKVMHKFSNSNRHKIRHTENKH
FRCKECDKSLCMLSRLTQHKKIHTRENFYKCEECGKTFNWSTNLSKPKKIHTGEKPYKCEVCGKAFHQSS
ILTKHKIIRTGEKPYKCAHCGKAFKQSSHLTRHKIIHTEEKPYKCEQCGKVFKQSPTLTKHQIIYTGEEP
YKCEECGKAFNLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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