NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15846.1 Public Mus musculus 2 Ak8 23 108 98 CCDS HistoryNCBI Gene:68870Re-query CCDS DB by CCDS ID:15846.1Re-query CCDS DB by GeneID:68870See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074156.6 ENSMUSP00000073789.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074156.6Link to Ensembl Protein Viewer:ENSMUSP00000073789.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074156Re-query CCDS DB by Protein ID:ENSMUSP00000073789
Original member Current member NCBI NM_001033874.2 NP_001029046.2 Accepted alive Link to Nucleotide Sequence:NM_001033874.2Link to Protein Sequence:NP_001029046.2Re-query CCDS DB by Nucleotide ID:NM_001033874Re-query CCDS DB by Protein ID:NP_001029046Link to BLAST:NP_001029046.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029046.2 479 Q32M07 479 100% 0 0

Chromosomal Locations for CCDS 15846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28700191 28700274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28702689 28702773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28709927 28709976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28712275 28712388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28716417 28716485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28733807 28733888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28734374 28734445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28735503 28735703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28739533 28739664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28742660 28742749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28759942 28760083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28809660 28809740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28812828 28813065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGATGCAACCACAGCCCCTCATCGCATTCCCCCGGAAATGCCTCAGTACGGGGAAGACTACTACATTT
TCGAGATGATGCAGAACATGTTGGAGCAGCTCCTGATCCACCAGCCGGAGGACCCCATCAGCTTCATGAT
CACTCACCTGCGCAGGAACAATGATAATGTGCCGAAGGTTGTGATATTAGGTCCGCCTGCCTCAGGGAAA
ACCACCATCGCCATGTGGCTCTGCAAACATCTAAACAGCAACCTCATCACCAAGGAGAGCTTACTAGAAA
GAGAGTTTTCCCGTCTGTCTGTGGAAGCCAAGAGTTACTACCAGGTTTACAAGAAGATTCCCAATTCGAT
TCTTGTCAGTCTTGTCCAGGAGCGTCTGAATGAAGATGACTGCCTCAGAAAGGGCTGGATCCTGGACGGC
ATCCCTGAGAGGCGGGAGCAGGCTCTGATGATCCAGACCCTGGGGCTGGCGCCCAAGCACGTCATTGTGC
TTAATGCTCCAGACACTGTCCTGATCGAGAGAAATGTGGGCAAGCGGATCGACCCTGTCACCGGAGAGAT
CTATCACACCACCTTCGACTGGCCCCCTGAGCCTGAAATACAGAACAGGCTGAGACAGCCGGAGGGCATC
TCGGAGATCGAAACGGCGAAGAAGCTGCTGGAGTACCACAGGCACATCATCAGGATTCTTCCTTCTTACC
CAAAAATCCTGAAAACCATCAGCTCAGACCAGCCGTGTGTGGATGTCTTCTACCAGGCTCTGACCTATGT
CCAATCTGGCCATCGATGCAATGCCCCATTCACCCCCAAGGTGCTGCTGTGTGGGCCGTTGGGCAGCGGG
AAGAGACTGCAGGCTACCCTTCTGGCCCAGAAATATGGCCTTGTAAACATCAGCTGCGGGCAGCTGCTGA
AGGAGGCTGTGGCAGCCAAGTCAAGCTTCGGGGAGCTCATCCAGCCATTCTTTGAAAAGAGGATGACAGT
TCCAGACAGTATCATCACCAAAGTTCTGGCTGATCGAATGGAGCAACAAGATTGCATCCAGAAAGGGTGG
GTGCTGCACGGCTTCCCAAGAGACCTGGACCAGGCCCGGATGCTGAACTCCATGGGCTACAATCCCAACA
GGGTCTTCTTCCTGAGTGTGCCACTGGATTCCATTCTGGAGCGGCTGACGCTGAGAAGGACAGACCCTGT
CACAGGAGAAAGGTTCCACCTCATGTACAAGCCCCCTCCCACCATAGAGGTCCAGGTCCGCCTCCTGCAG
AACCCCAAGGATTCAGAGGAGTACATCAAGCTCCAAACGGACCTGTTCTACAGGAACTCTGGGGATCTGG
AGCAGTACTACGATCGAGCCATCATTGTCAACGGAGACCAGGACCCATACACAGTTTTTGAGTATATAGA
GAGCGGGATCATTAATCCTCTGCCCAGGAAAGTTACCTGA

Translation (479 aa):
MDATTAPHRIPPEMPQYGEDYYIFEMMQNMLEQLLIHQPEDPISFMITHLRRNNDNVPKVVILGPPASGK
TTIAMWLCKHLNSNLITKESLLEREFSRLSVEAKSYYQVYKKIPNSILVSLVQERLNEDDCLRKGWILDG
IPERREQALMIQTLGLAPKHVIVLNAPDTVLIERNVGKRIDPVTGEIYHTTFDWPPEPEIQNRLRQPEGI
SEIETAKKLLEYHRHIIRILPSYPKILKTISSDQPCVDVFYQALTYVQSGHRCNAPFTPKVLLCGPLGSG
KRLQATLLAQKYGLVNISCGQLLKEAVAAKSSFGELIQPFFEKRMTVPDSIITKVLADRMEQQDCIQKGW
VLHGFPRDLDQARMLNSMGYNPNRVFFLSVPLDSILERLTLRRTDPVTGERFHLMYKPPPTIEVQVRLLQ
NPKDSEEYIKLQTDLFYRNSGDLEQYYDRAIIVNGDQDPYTVFEYIESGIINPLPRKVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH