NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25102.1 Public Mus musculus 11 Foxn1 23 108 98 CCDS HistoryNCBI Gene:15218Re-query CCDS DB by CCDS ID:25102.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108294.1 ENSMUSP00000103929.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108294.1Link to Ensembl Protein Viewer:ENSMUSP00000103929.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108294Re-query CCDS DB by Protein ID:ENSMUSP00000103929
Original member Current member NCBI NM_008238.2 NP_032264.1 Accepted alive Link to Nucleotide Sequence:NM_008238.2Link to Protein Sequence:NP_032264.1Re-query CCDS DB by Nucleotide ID:NM_008238Re-query CCDS DB by Protein ID:NP_032264Link to BLAST:NP_032264.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032264.1 648 Q61575 648 100% 0 0

Chromosomal Locations for CCDS 25102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78358751 78359070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78360777 78361268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78361426 78361633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78365941 78366037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78366867 78366997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78368707 78368820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78370957 78371418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78371816 78371938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGTGTCGCTACTCCCTCCGCAGTCTGACGTCACACTTCCAGGCTCCACCCGACTGGAGGGCGAACCCC
AAGGGGACCTCATGCAGGCTCCGGGCCTCCCAGACTCCCCTGCCCCACAGAACAAGCATGCTAACTTCAG
CTGCTCGTCGTTTGTGCCTGACGGCCCTCCAGAGAGGACACCCTCACTGCCCCCACACAGCCCCAGCATC
GCATCTCCAGACCCAGAGCAGATCCAGGGCCACTGCACAGCCGGACCCGGCCCGGGCTCCTTCCGCCTTT
CTCCTTCAGAAAAGTATCCTGGCTTTGGCTTTGAGGAGGGCCCAGCAGGCAGCCCAGGGCGCTTCCTCAA
GGGCAACCACATGCCTTTCCACCCCTACAAGAGGCACTTCCATGAGGACATCTTCTCTGAGGCCCAGACG
GCCATGGCACTTGATGGACACTCCTTTAAGACTCAGGGGGCACTGGAAGCCTTTGAGGAGATCCCTGTGG
ACATGGGCGATGCTGAGGCCTTCCTGCCTAGCTTCCCAGCAGAGGCTTGGTGCAATAAACTCCCTTACCC
CAGCCAGGAACACAACCAAATTCTGCAGGGGTCAGAGGTCAAGGTCAAGCCCCAAGCTCTGGACAGTGGT
CCTGGGATGTACTGCTACCAGCCTCCCTTGCAACATATGTACTGTTCTTCTCAGCCTGCCTTCCATCAGT
ACTCCCCGGGTGGAGGCAGCTACCCTGTGCCCTACCTGGGCTCACCTCACTATCCCTATCAGAGGATTGC
ACCCCAGGCCAACGCCGAAGGTCACCAGCCACTCTTCCCAAAGCCCATCTACTCTTACAGCATCCTCATC
TTCATGGCCCTTAAGAACAGTAAGACCGGAAGCCTTCCAGTCAGTGAAATCTACAATTTCATGACGGAGC
ACTTCCCTTACTTCAAGACTGCTCCTGATGGCTGGAAGAATTCTGTTCGCCATAACCTGTCCCTCAACAA
GTGCTTTGAGAAGGTGGAGAATAAATCCGGAAGTTCCTCTCGAAAGGGCTGTCTGTGGGCCCTCAATCCT
TCCAAAATCGACAAGATGCAGGAAGAACTGCAGAAGTGGAAGAGGAAAGACCCCATTGCTGTGCGCAAAA
GCATGGCCAAACCAGAAGAGCTGGACAGCCTCATTGGAGACAAAAGGGAAAAACTGGGCTCTCCGCTGCT
GGGCTGTCCACCCCCTGGGCTGGCAGGCCCAGGTCCCATCCGGCCCATGGCACCATCAGCTGGTCTTTCC
CAGCCTCTGCACCCAATGCATCCAGCTCCAGGCCCCATGCCTGGCAAGAACCCCCTGCAGGACCTACTGG
GTGGCCATGCTCCCTCCTGCTATGGGCAGACCTACCCACACCTTTCCCCCAGCCTGGCCCCTTCTGGACA
CCAGCAGCCATTGTTCCCACAGCCAGATGGGCATCTTGAGCTGCAGGCCCAGCCAGGCACCCCCCAGGAC
TCACCTCTACCTGCCCACACACCACCCAGCCACGGTGCCAAGCTGATGGCTGAGCCTTCCTCAGCCAGGA
CCATGCACGATACTCTACTGCCAGATGGAGACCTTGGGACTGACCTGGATGCTATCAACCCTTCTCTCAC
TGACTTCGACTTCCAGGGAAATCTGTGGGAGCAGCTGAAGGATGACAGCTTGGCCCTGGACCCCCTCGTA
TTGGTGACCTCGTCGCCGACGTCATCCTCCATGTTGCCACCCCCACCAGCAGCCCATTGCTTCCCCCCAG
GGCCTTGTCTGGCAGAAACAGGCAATGAGGCAGGTGAACTGGCACCTCCAGGCAGCGGCGGCTCCGGTGC
TCTGGGAGACATGCACCTCAGCACTCTCTACTCCGCCTTTGTGGAACTGGAGTCCACGCCCTCCTCAGCA
GCTGCCGGCCCTGCCGTGTACCTCAGTCCCGGCTCAAAGCCATTGGCTCTGGCTTGA

Translation (648 aa):
MVSLLPPQSDVTLPGSTRLEGEPQGDLMQAPGLPDSPAPQNKHANFSCSSFVPDGPPERTPSLPPHSPSI
ASPDPEQIQGHCTAGPGPGSFRLSPSEKYPGFGFEEGPAGSPGRFLKGNHMPFHPYKRHFHEDIFSEAQT
AMALDGHSFKTQGALEAFEEIPVDMGDAEAFLPSFPAEAWCNKLPYPSQEHNQILQGSEVKVKPQALDSG
PGMYCYQPPLQHMYCSSQPAFHQYSPGGGSYPVPYLGSPHYPYQRIAPQANAEGHQPLFPKPIYSYSILI
FMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNP
SKIDKMQEELQKWKRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLAGPGPIRPMAPSAGLS
QPLHPMHPAPGPMPGKNPLQDLLGGHAPSCYGQTYPHLSPSLAPSGHQQPLFPQPDGHLELQAQPGTPQD
SPLPAHTPPSHGAKLMAEPSSARTMHDTLLPDGDLGTDLDAINPSLTDFDFQGNLWEQLKDDSLALDPLV
LVTSSPTSSSMLPPPPAAHCFPPGPCLAETGNEAGELAPPGSGGSGALGDMHLSTLYSAFVELESTPSSA
AAGPAVYLSPGSKPLALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH