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Report for CCDS33841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33841.1 Public Homo sapiens 3 ROPN1B 24 110 108 CCDS HistoryNCBI Gene:152015Re-query CCDS DB by CCDS ID:33841.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33841.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251776.8 ENSP00000251776.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000251776.8Link to Ensembl Protein Viewer:ENSP00000251776.4Re-query CCDS DB by Nucleotide ID:ENST00000251776Re-query CCDS DB by Protein ID:ENSP00000251776
Original member Current member EBI ENST00000514116.6 ENSP00000426271.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000514116.6Link to Ensembl Protein Viewer:ENSP00000426271.1Re-query CCDS DB by Nucleotide ID:ENST00000514116Re-query CCDS DB by Protein ID:ENSP00000426271
Original member Current member NCBI NM_001012337.3 NP_001012337.1 Accepted alive Link to Nucleotide Sequence:NM_001012337.3Link to Protein Sequence:NP_001012337.1Re-query CCDS DB by Nucleotide ID:NM_001012337Re-query CCDS DB by Protein ID:NP_001012337Link to BLAST:NP_001012337.1
Original member Current member NCBI NM_001308313.2 NP_001295242.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001308313.2Link to Protein Sequence:NP_001295242.1Re-query CCDS DB by Nucleotide ID:NM_001308313Re-query CCDS DB by Protein ID:NP_001295242Link to BLAST:NP_001295242.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012337.1 212 Q9BZX4-1 212 100% 0 0
NP_001295242.1 212 Q9BZX4-1 212 100% 0 0

Chromosomal Locations for CCDS 33841.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 125972055 125972170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125975563 125975680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125977004 125977165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125982270 125982445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125983254 125983320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGCTCAGACAGATAAGCCAACATGCATCCCGCCGGAGCTGCCGAAAATGCTGAAGGAGTTTGCCAAAG
CCGCCATTCGGGCGCAGCCGCAGGACCTCATCCAGTGGGGGGCCGATTATTTTGAGGCCCTGTCCCGTGG
AGAGACGCCTCCGGTGAGAGAGCGGTCTGAGCGAGTCGCTTTGTGTAACTGGGCAGAGCTAACACCTGAG
CTGTTAAAGATCCTGCATTCTCAGGTTGCTGGCAGACTGATCATCCGTGCAGAGGAGCTGGCCCAGATGT
GGAAAGTGGTGAATCTCCCAACAGATCTGTTTAATAGTGTGATGAATGTGGGTCGCTTCACGGAGGAGAT
CGAGTGGCTGAAGTTTTTAGCCCTTGCTTGCAGCGCTCTGGGAGTTACTATTACCAAAACTCTCAAGATA
GTGTGTGAGGTCTTATCATGTGACCACAATGGTGGGTTGCCCCGAATCCCATTCAGCACCTTCCAGTTTC
TCTACACGTATATTGCCGAAGTGGATGGGGAGATCTGTGCATCACATGTCAGCAGGATGCTAAACTACAT
TGAACAGGAAGTAATTGGTCCTGATGGTTTAATCACGGTGAATGACTTTACCCAAAACCCCAGGGTTTGG
CTGGAGTAA

Translation (212 aa):
MAQTDKPTCIPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVALCNWAELTPE
LLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWLKFLALACSALGVTITKTLKI
VCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHVSRMLNYIEQEVIGPDGLITVNDFTQNPRVW
LE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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