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Report for CCDS82247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82247.1 Public Homo sapiens 18 ZNF396 24 110 108 CCDS HistoryNCBI Gene:252884Re-query CCDS DB by CCDS ID:82247.1Re-query CCDS DB by GeneID:252884See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82247.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000589332.7 ENSP00000466500.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000589332.7Link to Ensembl Protein Viewer:ENSP00000466500.1Re-query CCDS DB by Nucleotide ID:ENST00000589332Re-query CCDS DB by Protein ID:ENSP00000466500
Original member Current member NCBI NM_001322286.2 NP_001309215.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001322286.2Link to Protein Sequence:NP_001309215.1Re-query CCDS DB by Nucleotide ID:NM_001322286Re-query CCDS DB by Protein ID:NP_001309215Link to BLAST:NP_001309215.1
Original member Current member NCBI NM_001322290.2 NP_001309219.1 Accepted alive Link to Nucleotide Sequence:NM_001322290.2Link to Protein Sequence:NP_001309219.1Re-query CCDS DB by Nucleotide ID:NM_001322290Re-query CCDS DB by Protein ID:NP_001309219Link to BLAST:NP_001309219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309215.1 335 Q96N95-1 335 100% 0 0
NP_001309219.1 335 Q96N95-1 335 100% 0 0

Chromosomal Locations for CCDS 82247.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35369215 35369660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35373456 35373600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35373876 35374292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGTCTGCAAAATTGGGAAAGTCATCATCACTCCTAACACAAACTTCAGAGGAGTGTAATGGGATTCTGA
CAGAGAAGATGGAAGAGGAAGAGCAGACCTGTGATCCAGACTCTAGCCTCCACTGGAGCAGCAGCTACAG
CCCAGAGACCTTCCGCCAGCAATTCAGGCAGTTTGGCTACCAGGATTCACCTGGGCCCCATGAGGCTCTG
AGCCGGCTCTGGGAACTTTGTCATCTCTGGCTGAGGCCGGAAGTGCACACCAAGGAGCAGATCCTGGAGC
TGCTGGTGCTGGAGCAGTTCCTGGCCATCCTCCCAAAAGAGCTTCAGGCCTGGGTGCAGAAGCATCATCC
AGAGAATGGAGAGGAAACTGTGACTATGCTGGAGGATGTGGAGAGAGAGCTTGATGGACCAAAGCAGATC
TTTTTTGGACGAAGGAAGGACATGATTGCAGAGAAGCTAGCACCTTCAGAAATCACTGAGGAATTGCCAA
GTAGCCAGCTCATGCCCGTGAAGAAGCAGCTCCAGGGAGCATCATGGGAGCTTCAGTCCTTAAGACCACA
TGATGAAGACATCAAAACTACAAATGTGAAATCTGCTTCAAGGCAAAAGACTTCTTTAGGCATAGAACTG
CATTGCAATGTTTCCAATATCCTTCATATGAATGGCTCCCAGAGTTCCACATATAGAGGAACCTATGAAC
AAGATGGTAGGTTTGAAAAGAGACAAGGAAACCCTTCTTGGAAAAAACAACAGAAATGTGATGAATGTGG
CAAAATCTTTAGTCAGAGCTCAGCCCTTATTTTACATCAGAGAATCCACAGTGGAAAGAAACCTTATGCA
TGTGACGAGTGTGCAAAGGCATTCAGCCGAAGCGCAATTCTGATTCAGCATCGACGAACCCATACTGGTG
AGAAGCCCTACAAGTGTCATGACTGTGGCAAAGCCTTTAGTCAGAGCTCAAATCTTTTTAGACATAGGAA
AAGACACATTAGAAAAAAAGTCCCATAA

Translation (335 aa):
MSAKLGKSSSLLTQTSEECNGILTEKMEEEEQTCDPDSSLHWSSSYSPETFRQQFRQFGYQDSPGPHEAL
SRLWELCHLWLRPEVHTKEQILELLVLEQFLAILPKELQAWVQKHHPENGEETVTMLEDVERELDGPKQI
FFGRRKDMIAEKLAPSEITEELPSSQLMPVKKQLQGASWELQSLRPHDEDIKTTNVKSASRQKTSLGIEL
HCNVSNILHMNGSQSSTYRGTYEQDGRFEKRQGNPSWKKQQKCDECGKIFSQSSALILHQRIHSGKKPYA
CDECAKAFSRSAILIQHRRTHTGEKPYKCHDCGKAFSQSSNLFRHRKRHIRKKVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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